Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CBX3	chr10:44097072-44097391	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:
2	chr10:44068669..44071698-chr10:44096672..44099575,3	K562	blood:
3	chr10:44075835..44077526-chr10:44095693..44098243,2	K562	blood:
4	chr10:44075546..44077335-chr10:44095591..44097193,2	K562	blood:

Variant related genes	Relation type
ZNF485	TF binding region
ENSG00000196793	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10793447	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793448	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10793449	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793451	0.88[ASN][1000 genomes]
rs10899837	0.92[ASN][1000 genomes]
rs10899838	0.86[ASN][1000 genomes]
rs11238592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1974282	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2039723	0.86[ASN][1000 genomes]
rs2039724	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2066045	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066046	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2393936	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393946	0.88[ASN][1000 genomes]
rs3123680	0.87[ASN][1000 genomes]
rs3123681	0.87[ASN][1000 genomes]
rs4948749	0.88[ASN][1000 genomes]
rs6593362	0.92[ASN][1000 genomes]
rs7342073	0.88[ASN][1000 genomes]
rs7474652	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10793450	ZNF239	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44091400-44101400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:44091800-44101200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:44092200-44101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:44093000-44101600	Weak transcription	Primary T cells from cord blood	blood
5	chr10:44095000-44101400	Weak transcription	Spleen	Spleen

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