Variant report

Variant	rs11238592
Chromosome Location	chr10:44091440-44091441
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44086156..44088393-chr10:44091016..44092665,2	MCF-7	breast:
2	chr10:44089879..44092724-chr10:44102524..44104158,2	MCF-7	breast:
3	chr10:44090591..44094323-chr10:44095437..44099024,4	K562	blood:
4	chr10:44089547..44092251-chr10:44101475..44103365,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10793446	0.90[ASN][1000 genomes]
rs10793447	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793448	0.90[ASN][1000 genomes]
rs10793449	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793450	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10793451	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10899837	0.88[ASN][1000 genomes]
rs10899838	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs1974282	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2039723	0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs2039724	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2066045	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2066046	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2393936	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2393946	0.92[ASN][1000 genomes]
rs3123680	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs3123681	0.83[ASN][1000 genomes]
rs4948749	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6593362	0.88[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7342073	0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7474652	0.88[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44089400-44092000	Enhancers	Fetal Intestine Small	intestine
2	chr10:44089400-44092000	Enhancers	Spleen	Spleen
3	chr10:44090200-44091600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
4	chr10:44090200-44091600	Enhancers	Pancreas	Pancrea
5	chr10:44090200-44091800	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr10:44090200-44091800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr10:44090200-44091800	Enhancers	Fetal Intestine Large	intestine
8	chr10:44090200-44091800	Enhancers	Small Intestine	intestine
9	chr10:44090200-44092000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:44090200-44092000	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:44090200-44092200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr10:44090200-44092200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr10:44090200-44092200	Enhancers	Fetal Kidney	kidney
14	chr10:44090200-44092200	Enhancers	Fetal Stomach	stomach
15	chr10:44090200-44092400	Enhancers	Fetal Muscle Leg	muscle
16	chr10:44090200-44092800	Enhancers	Fetal Heart	heart
17	chr10:44090400-44091600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr10:44090400-44091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:44090400-44092000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr10:44090600-44091600	Enhancers	Colonic Mucosa	Colon
21	chr10:44090600-44091800	Enhancers	Esophagus	oesophagus
22	chr10:44090600-44092000	Enhancers	Lung	lung
23	chr10:44090600-44092200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr10:44090800-44091600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr10:44090800-44091600	Enhancers	NHDF-Ad	bronchial
26	chr10:44090800-44094000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:44090800-44094000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:44091000-44091600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
29	chr10:44091000-44091600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:44091000-44091800	Enhancers	Adipose Nuclei	Adipose
31	chr10:44091000-44091800	Enhancers	Right Atrium	heart
32	chr10:44091000-44091800	Enhancers	Thymus	Thymus
33	chr10:44091000-44092000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:44091000-44092000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:44091000-44092000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:44091000-44092000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:44091000-44092000	Enhancers	Fetal Thymus	thymus
38	chr10:44091000-44092000	Enhancers	Left Ventricle	heart
39	chr10:44091000-44092000	Enhancers	Ovary	ovary
40	chr10:44091000-44092000	Enhancers	Right Ventricle	heart
41	chr10:44091000-44092000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr10:44091000-44092000	Enhancers	Dnd41	blood
43	chr10:44091000-44092000	Flanking Active TSS	GM12878-XiMat	blood
44	chr10:44091000-44092200	Enhancers	Primary B cells from peripheral blood	blood
45	chr10:44091000-44092200	Enhancers	Muscle Satellite Cultured Cells	--
46	chr10:44091000-44092200	Enhancers	Liver	Liver
47	chr10:44091000-44092600	Enhancers	Fetal Lung	lung
48	chr10:44091000-44093400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr10:44091200-44091600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:44091200-44091600	Enhancers	Primary B cells from cord blood	blood

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