Variant report

Variant	rs2393936
Chromosome Location	chr10:44090407-44090408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:44089879..44092724-chr10:44102524..44104158,2	MCF-7	breast:
2	chr10:44080380..44083212-chr10:44088801..44091103,2	K562	blood:
3	chr10:44089547..44092251-chr10:44101475..44103365,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198298	Chromatin interaction
ENSG00000232004	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10793446	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10793447	0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793448	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10793449	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793450	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10793451	0.94[JPT][hapmap]
rs10899838	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11238592	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1974282	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2039723	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs2039724	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2066045	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2066046	0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2393946	0.83[ASN][1000 genomes]
rs3123680	0.94[JPT][hapmap]
rs4948749	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6593362	0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7342073	0.94[JPT][hapmap]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44086600-44090600	Weak transcription	Gastric	stomach
2	chr10:44089200-44090600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:44089400-44092000	Enhancers	Fetal Intestine Small	intestine
4	chr10:44089400-44092000	Enhancers	Spleen	Spleen
5	chr10:44090000-44090600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:44090000-44090600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:44090000-44090600	Enhancers	Right Ventricle	heart
8	chr10:44090200-44090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:44090200-44090600	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:44090200-44090600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:44090200-44090600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr10:44090200-44090600	Enhancers	Fetal Lung	lung
13	chr10:44090200-44090600	Enhancers	Fetal Thymus	thymus
14	chr10:44090200-44090600	Enhancers	Left Ventricle	heart
15	chr10:44090200-44090600	Enhancers	Ovary	ovary
16	chr10:44090200-44090600	Enhancers	NHDF-Ad	bronchial
17	chr10:44090200-44090800	Flanking Active TSS	GM12878-XiMat	blood
18	chr10:44090200-44091000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:44090200-44091200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:44090200-44091200	Enhancers	Stomach Mucosa	stomach
21	chr10:44090200-44091400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr10:44090200-44091400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr10:44090200-44091400	Enhancers	Psoas Muscle	Psoas
24	chr10:44090200-44091600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr10:44090200-44091600	Enhancers	Pancreas	Pancrea
26	chr10:44090200-44091800	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr10:44090200-44091800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr10:44090200-44091800	Enhancers	Fetal Intestine Large	intestine
29	chr10:44090200-44091800	Enhancers	Small Intestine	intestine
30	chr10:44090200-44092000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:44090200-44092000	Enhancers	Fetal Muscle Trunk	muscle
32	chr10:44090200-44092200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr10:44090200-44092200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr10:44090200-44092200	Enhancers	Fetal Kidney	kidney
35	chr10:44090200-44092200	Enhancers	Fetal Stomach	stomach
36	chr10:44090200-44092400	Enhancers	Fetal Muscle Leg	muscle
37	chr10:44090200-44092800	Enhancers	Fetal Heart	heart
38	chr10:44090400-44090600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:44090400-44090600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:44090400-44090600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:44090400-44090600	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr10:44090400-44090600	Enhancers	Colon Smooth Muscle	Colon
43	chr10:44090400-44090600	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:44090400-44090600	Enhancers	Right Atrium	heart
45	chr10:44090400-44090600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr10:44090400-44090600	Active TSS	Stomach Smooth Muscle	stomach
47	chr10:44090400-44090600	Enhancers	Thymus	Thymus
48	chr10:44090400-44090800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:44090400-44090800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:44090400-44090800	Enhancers	Brain Cingulate Gyrus	brain

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