Variant report

Variant	rs10793518
Chromosome Location	chr10:44510460-44510461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44509739..44511242-chr10:44512811..44514993,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10736825	0.99[ASN][1000 genomes]
rs10793510	0.89[EUR][1000 genomes]
rs10793512	0.80[ASN][1000 genomes]
rs10899962	0.83[ASN][1000 genomes]
rs10899967	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899968	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412267	0.96[ASN][1000 genomes]
rs12415001	0.94[ASN][1000 genomes]
rs12573239	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1388975	0.99[ASN][1000 genomes]
rs1492711	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1565660	0.99[ASN][1000 genomes]
rs1602716	0.99[ASN][1000 genomes]
rs1891883	0.99[ASN][1000 genomes]
rs2051120	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2185946	0.99[ASN][1000 genomes]
rs2185947	0.99[ASN][1000 genomes]
rs2279555	0.82[EUR][1000 genomes]
rs2624688	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2902339	0.99[ASN][1000 genomes]
rs2902340	0.83[ASN][1000 genomes]
rs4615977	0.99[ASN][1000 genomes]
rs4948593	0.80[ASN][1000 genomes]
rs4948594	0.80[ASN][1000 genomes]
rs4948595	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948596	1.00[ASN][1000 genomes]
rs4948808	0.80[ASN][1000 genomes]
rs4948809	0.80[ASN][1000 genomes]
rs4948812	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948816	1.00[ASN][1000 genomes]
rs4948817	1.00[ASN][1000 genomes]
rs4948819	0.85[ASN][1000 genomes]
rs4948820	0.99[ASN][1000 genomes]
rs4997087	0.83[ASN][1000 genomes]
rs6593388	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6593392	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6593393	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6593394	0.99[ASN][1000 genomes]
rs7074248	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7084564	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7903881	0.99[ASN][1000 genomes]
rs7917534	0.99[ASN][1000 genomes]
rs7919657	0.97[ASN][1000 genomes]
rs7922924	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7923335	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs955582	0.99[ASN][1000 genomes]
rs955583	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44504000-44513000	Weak transcription	Lung	lung
3	chr10:44505600-44512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:44506600-44510600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44506600-44513000	Weak transcription	Gastric	stomach
6	chr10:44506800-44511600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:44506800-44512200	Weak transcription	Osteobl	bone
8	chr10:44507400-44511200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:44507400-44511600	Weak transcription	Right Ventricle	heart
10	chr10:44507400-44511800	Weak transcription	Left Ventricle	heart
11	chr10:44507600-44512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:44507600-44513200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:44507800-44513400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:44508000-44511200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:44508000-44511200	Weak transcription	GM12878-XiMat	blood
16	chr10:44508400-44511200	Weak transcription	Pancreas	Pancrea
17	chr10:44508400-44512800	Weak transcription	Spleen	Spleen
18	chr10:44508600-44511600	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:44508600-44512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:44509000-44511600	Enhancers	Primary B cells from cord blood	blood
21	chr10:44509600-44510600	Weak transcription	Adipose Nuclei	Adipose
22	chr10:44510200-44510600	Enhancers	Right Atrium	heart
23	chr10:44510400-44510600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr10:44510400-44510800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:44510400-44510800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr10:44510400-44511800	Weak transcription	Placenta	Placenta
27	chr10:44510400-44512600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:44510400-44513600	Enhancers	Ovary	ovary

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