Variant report

Variant	rs7923335
Chromosome Location	chr10:44501501-44501502
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44495582..44498780-chr10:44499655..44502319,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10736825	0.86[ASN][1000 genomes]
rs10793510	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793512	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793518	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899960	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899962	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899967	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899968	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12412267	0.83[ASN][1000 genomes]
rs12415001	0.82[ASN][1000 genomes]
rs12573239	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388975	0.86[ASN][1000 genomes]
rs1492711	0.86[ASN][1000 genomes]
rs1565660	0.86[ASN][1000 genomes]
rs1602716	0.86[ASN][1000 genomes]
rs1891883	0.86[ASN][1000 genomes]
rs2051120	0.86[ASN][1000 genomes]
rs2185946	0.86[ASN][1000 genomes]
rs2185947	0.86[ASN][1000 genomes]
rs2279555	0.87[ASN][1000 genomes]
rs2624688	0.85[ASN][1000 genomes]
rs2902339	0.86[ASN][1000 genomes]
rs2902340	0.95[ASN][1000 genomes]
rs4615977	0.86[ASN][1000 genomes]
rs4948593	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948594	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948595	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948596	0.87[ASN][1000 genomes]
rs4948803	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948808	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948809	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948811	0.87[AMR][1000 genomes]
rs4948812	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948816	0.87[ASN][1000 genomes]
rs4948817	0.87[ASN][1000 genomes]
rs4948820	0.86[ASN][1000 genomes]
rs4997087	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593377	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6593384	0.86[AMR][1000 genomes]
rs6593385	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6593388	0.86[ASN][1000 genomes]
rs6593392	0.86[ASN][1000 genomes]
rs6593393	0.86[ASN][1000 genomes]
rs6593394	0.86[ASN][1000 genomes]
rs7074248	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084564	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903881	0.86[ASN][1000 genomes]
rs7908336	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7917534	0.86[ASN][1000 genomes]
rs7919657	0.84[ASN][1000 genomes]
rs7922924	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs955582	0.86[ASN][1000 genomes]
rs955583	0.86[ASN][1000 genomes]
rs988738	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44494200-44502600	Weak transcription	Right Atrium	heart
2	chr10:44495800-44504400	Weak transcription	Pancreas	Pancrea
3	chr10:44500000-44502600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:44500000-44503200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr10:44500600-44502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:44500800-44503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44500800-44503800	Weak transcription	Spleen	Spleen
8	chr10:44501000-44508400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:44501200-44501600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:44501200-44503800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:44501400-44502200	Weak transcription	Fetal Muscle Leg	muscle

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