Variant report

Variant	rs12573239
Chromosome Location	chr10:44505025-44505026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10736825	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10793510	0.90[ASN][1000 genomes]
rs10793512	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10793518	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899960	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899962	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899967	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899968	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12412267	0.83[ASN][1000 genomes]
rs12415001	0.82[ASN][1000 genomes]
rs1388975	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1492711	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1565660	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1602716	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1891883	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2051120	0.86[ASN][1000 genomes]
rs2185946	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2185947	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2279555	0.87[ASN][1000 genomes]
rs2624688	0.85[ASN][1000 genomes]
rs2902339	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2902340	0.95[ASN][1000 genomes]
rs4615977	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4948593	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948594	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948596	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948803	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4948808	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948809	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948811	0.82[AMR][1000 genomes]
rs4948812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948816	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948817	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4948819	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4948820	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4997087	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6593377	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6593384	0.81[AMR][1000 genomes]
rs6593385	0.85[ASN][1000 genomes]
rs6593388	0.86[ASN][1000 genomes]
rs6593392	0.86[ASN][1000 genomes]
rs6593393	0.86[ASN][1000 genomes]
rs6593394	0.86[ASN][1000 genomes]
rs7074248	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903881	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7908336	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7917534	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7919657	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7922924	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7923335	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955582	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs955583	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs988738	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44501000-44508400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44502200-44506800	Enhancers	Adipose Nuclei	Adipose
4	chr10:44502200-44507400	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44502400-44506600	Enhancers	GM12878-XiMat	blood
6	chr10:44502600-44506200	Weak transcription	Fetal Brain Female	brain
7	chr10:44502600-44507800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:44503200-44505400	Weak transcription	Psoas Muscle	Psoas
9	chr10:44503200-44506400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:44503400-44507400	Enhancers	HUVEC	blood vessel
11	chr10:44503800-44505600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44503800-44507200	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:44503800-44507400	Enhancers	Left Ventricle	heart
14	chr10:44504000-44513000	Weak transcription	Lung	lung
15	chr10:44504200-44506800	Enhancers	Osteobl	bone
16	chr10:44504400-44505400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:44504400-44508000	Enhancers	Fetal Brain Male	brain
18	chr10:44504600-44505200	Enhancers	Fetal Kidney	kidney
19	chr10:44504600-44505400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:44504600-44505400	Weak transcription	Pancreas	Pancrea
21	chr10:44504600-44505400	Weak transcription	Right Atrium	heart
22	chr10:44504600-44506200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:44504800-44505200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:44504800-44505200	Weak transcription	Fetal Heart	heart
25	chr10:44504800-44505200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr10:44504800-44505400	Enhancers	Fetal Thymus	thymus
27	chr10:44504800-44508200	Weak transcription	Spleen	Spleen
28	chr10:44504800-44509000	Enhancers	Ovary	ovary
29	chr10:44505000-44505600	Enhancers	NHDF-Ad	bronchial
30	chr10:44505000-44506600	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links