Variant report

Variant	rs2624688
Chromosome Location	chr10:44547210-44547211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44546387..44548654-chr10:44553125..44555103,2	K562	blood:
2	chr10:44543939..44546432-chr10:44546578..44548267,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10736825	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10793518	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10899962	0.81[ASN][1000 genomes]
rs10899967	0.93[ASN][1000 genomes]
rs10899968	0.97[ASN][1000 genomes]
rs12412267	0.99[ASN][1000 genomes]
rs12415001	0.94[ASN][1000 genomes]
rs12573239	0.85[ASN][1000 genomes]
rs1388975	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1492711	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1565660	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1602716	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1891883	0.99[ASN][1000 genomes]
rs2051120	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2185946	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2185947	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2902339	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2902340	0.81[ASN][1000 genomes]
rs4615977	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4948595	0.85[ASN][1000 genomes]
rs4948596	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4948812	0.85[ASN][1000 genomes]
rs4948816	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4948817	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4948819	0.82[ASN][1000 genomes]
rs4948820	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4997087	0.81[ASN][1000 genomes]
rs6593388	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593392	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593393	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593394	0.99[ASN][1000 genomes]
rs7074248	0.85[ASN][1000 genomes]
rs7084564	0.85[ASN][1000 genomes]
rs7903881	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7917534	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7919657	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7922924	0.83[ASN][1000 genomes]
rs7923335	0.85[ASN][1000 genomes]
rs955582	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs955583	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44541200-44549800	Weak transcription	Left Ventricle	heart
2	chr10:44542400-44552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44543200-44552400	Weak transcription	Gastric	stomach
4	chr10:44544400-44548000	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44544800-44548600	Enhancers	Pancreas	Pancrea
6	chr10:44546000-44548000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:44546200-44547400	Enhancers	Ovary	ovary
8	chr10:44546200-44548800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44546400-44547400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:44546400-44547800	Enhancers	Colon Smooth Muscle	Colon
11	chr10:44546400-44548200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:44546400-44548200	Enhancers	Stomach Smooth Muscle	stomach
13	chr10:44546600-44547400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:44546600-44547400	Enhancers	Fetal Brain Male	brain
15	chr10:44546600-44547800	Enhancers	NHEK	skin
16	chr10:44546600-44548000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:44546600-44548000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:44546600-44548000	Enhancers	NH-A	brain
19	chr10:44546600-44548200	Enhancers	Aorta	Aorta
20	chr10:44546600-44549600	Enhancers	Osteobl	bone
21	chr10:44546800-44548200	Enhancers	NHDF-Ad	bronchial
22	chr10:44547000-44547600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:44547000-44547800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:44547000-44547800	Enhancers	Rectal Smooth Muscle	rectum
25	chr10:44547000-44547800	Enhancers	HSMM	muscle
26	chr10:44547000-44548000	Enhancers	Psoas Muscle	Psoas
27	chr10:44547000-44548200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:44547000-44548200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr10:44547200-44547400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:44547200-44548000	Weak transcription	Esophagus	oesophagus

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