Variant report

Variant	rs6593388
Chromosome Location	chr10:44512749-44512750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10736825	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793518	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10899962	0.82[ASN][1000 genomes]
rs10899967	0.94[ASN][1000 genomes]
rs10899968	0.99[ASN][1000 genomes]
rs12412267	0.97[ASN][1000 genomes]
rs12415001	0.96[ASN][1000 genomes]
rs12573239	0.86[ASN][1000 genomes]
rs1388975	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492711	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565660	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1602716	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1891883	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2051120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185946	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185947	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624688	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902339	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2902340	0.82[ASN][1000 genomes]
rs4615977	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948595	0.86[ASN][1000 genomes]
rs4948596	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4948812	0.86[ASN][1000 genomes]
rs4948816	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4948817	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4948819	0.84[ASN][1000 genomes]
rs4948820	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4997087	0.82[ASN][1000 genomes]
rs6593392	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593394	1.00[ASN][1000 genomes]
rs7074248	0.86[ASN][1000 genomes]
rs7084564	0.86[ASN][1000 genomes]
rs7903881	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917534	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919657	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922924	0.85[ASN][1000 genomes]
rs7923335	0.86[ASN][1000 genomes]
rs955582	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955583	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44504000-44513000	Weak transcription	Lung	lung
2	chr10:44506600-44513000	Weak transcription	Gastric	stomach
3	chr10:44507600-44513200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:44507800-44513400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:44508400-44512800	Weak transcription	Spleen	Spleen
6	chr10:44508600-44512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr10:44510400-44513600	Enhancers	Ovary	ovary
8	chr10:44510600-44513200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:44510600-44513400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:44510600-44513800	Enhancers	Adipose Nuclei	Adipose
11	chr10:44511200-44513200	Enhancers	Liver	Liver
12	chr10:44511200-44513200	Enhancers	Fetal Muscle Leg	muscle
13	chr10:44511200-44513200	Enhancers	GM12878-XiMat	blood
14	chr10:44511400-44513400	Enhancers	Stomach Smooth Muscle	stomach
15	chr10:44511400-44513600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:44511400-44513600	Enhancers	Right Atrium	heart
17	chr10:44511600-44513400	Enhancers	Colon Smooth Muscle	Colon
18	chr10:44511600-44513400	Enhancers	Right Ventricle	heart
19	chr10:44511800-44513000	Weak transcription	Pancreas	Pancrea
20	chr10:44511800-44513200	Enhancers	Rectal Smooth Muscle	rectum
21	chr10:44511800-44513600	Enhancers	Left Ventricle	heart
22	chr10:44511800-44537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:44512000-44512800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr10:44512000-44513200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:44512000-44513200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:44512000-44513400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:44512200-44513400	Enhancers	Duodenum Mucosa	Duodenum
28	chr10:44512200-44513400	Enhancers	NHDF-Ad	bronchial
29	chr10:44512200-44513400	Enhancers	Osteobl	bone
30	chr10:44512400-44512800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:44512400-44512800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:44512400-44516400	Weak transcription	Colonic Mucosa	Colon
33	chr10:44512400-44516400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:44512600-44513000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:44512600-44513000	Enhancers	HSMMtube	muscle
36	chr10:44512600-44513600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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