Variant report

Variant	rs10899967
Chromosome Location	chr10:44509338-44509339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10736825	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10793510	0.82[ASN][1000 genomes]
rs10793512	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793518	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899960	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899962	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10899968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12412267	0.91[ASN][1000 genomes]
rs12415001	0.90[ASN][1000 genomes]
rs12573239	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1388975	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1492711	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1565660	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1602716	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1891883	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2051120	0.94[ASN][1000 genomes]
rs2185946	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2185947	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2624688	0.93[ASN][1000 genomes]
rs2902339	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2902340	0.87[ASN][1000 genomes]
rs4615977	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4948593	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948594	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948595	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948596	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948803	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4948808	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948809	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948812	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948816	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948817	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948819	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948820	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4997087	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6593377	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6593388	0.94[ASN][1000 genomes]
rs6593392	0.94[ASN][1000 genomes]
rs6593393	0.94[ASN][1000 genomes]
rs6593394	0.94[ASN][1000 genomes]
rs7074248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7084564	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7903881	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7908336	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917534	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7919657	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7922924	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7923335	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs955582	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs955583	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs988738	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44504000-44513000	Weak transcription	Lung	lung
3	chr10:44505600-44512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:44506600-44510600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr10:44506600-44513000	Weak transcription	Gastric	stomach
6	chr10:44506800-44511600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:44506800-44512200	Weak transcription	Osteobl	bone
8	chr10:44507200-44510400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:44507400-44511200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:44507400-44511600	Weak transcription	Right Ventricle	heart
11	chr10:44507400-44511800	Weak transcription	Left Ventricle	heart
12	chr10:44507600-44512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:44507600-44513200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr10:44507800-44513400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:44508000-44511200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:44508000-44511200	Weak transcription	GM12878-XiMat	blood
17	chr10:44508400-44510200	Weak transcription	Right Atrium	heart
18	chr10:44508400-44510400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:44508400-44511200	Weak transcription	Pancreas	Pancrea
20	chr10:44508400-44512800	Weak transcription	Spleen	Spleen
21	chr10:44508600-44511600	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:44508600-44512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:44509000-44509600	Enhancers	Adipose Nuclei	Adipose
24	chr10:44509000-44510400	Weak transcription	Ovary	ovary
25	chr10:44509000-44511600	Enhancers	Primary B cells from cord blood	blood
26	chr10:44509200-44509800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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