Variant report

Variant	rs10798133
Chromosome Location	chr1:172625533-172625534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172623804..172625687-chr12:112846730..112848894,2	MCF-7	breast:
2	chr1:172617279..172620543-chr1:172622244..172626720,4	K562	blood:

Variant related genes	Relation type
ENSG00000089009	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1041906	0.85[EUR][1000 genomes]
rs1041907	0.85[EUR][1000 genomes]
rs10753023	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798130	0.84[EUR][1000 genomes]
rs1492899	0.85[EUR][1000 genomes]
rs1492900	0.83[EUR][1000 genomes]
rs1873794	0.85[EUR][1000 genomes]
rs1873795	0.85[EUR][1000 genomes]
rs1873796	0.85[EUR][1000 genomes]
rs2021838	0.85[EUR][1000 genomes]
rs2021839	0.85[EUR][1000 genomes]
rs2131373	0.85[EUR][1000 genomes]
rs2639615	0.88[EUR][1000 genomes]
rs2639616	0.85[EUR][1000 genomes]
rs2639617	0.85[EUR][1000 genomes]
rs2639618	0.85[EUR][1000 genomes]
rs2859229	0.85[EUR][1000 genomes]
rs2859232	0.85[EUR][1000 genomes]
rs2859233	0.85[EUR][1000 genomes]
rs2859234	0.84[EUR][1000 genomes]
rs2859235	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2859236	0.84[EUR][1000 genomes]
rs2859237	0.84[EUR][1000 genomes]
rs2859238	0.84[EUR][1000 genomes]
rs2859239	0.84[EUR][1000 genomes]
rs2859240	0.86[EUR][1000 genomes]
rs2859242	0.88[EUR][1000 genomes]
rs2859245	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859246	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2859247	0.96[ASN][1000 genomes]
rs2933547	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3021335	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172616800-172627400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:172617400-172626800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:172617600-172626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:172622400-172626800	Weak transcription	Left Ventricle	heart
5	chr1:172622600-172627200	Weak transcription	Primary T cells from cord blood	blood
6	chr1:172622800-172627400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:172623600-172628000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:172623800-172627600	Weak transcription	K562	blood
9	chr1:172624000-172626800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:172624000-172631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:172624400-172627200	Weak transcription	A549	lung
13	chr1:172624400-172631600	Weak transcription	NHEK	skin
14	chr1:172624400-172631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:172624600-172626800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:172624600-172631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:172624800-172627200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:172625000-172630200	Weak transcription	HMEC	breast

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