The 2.0 version of rSNPBase

Variant report

Variant rs1873796
Chromosome Location chr1:172616639-172616640
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172608800-172624000 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:172613000-172617200 Enhancers Primary T helper cells PMA-I stimulated --
3 chr1:172613200-172620200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:172613200-172620200 Weak transcription HMEC breast
5 chr1:172613600-172623400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:172613800-172623400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr1:172614600-172616800 Enhancers Left Ventricle heart
8 chr1:172615000-172617000 Enhancers Fetal Thymus thymus
9 chr1:172615200-172617000 Enhancers Primary T helper naive cells fromperipheralblood blood
10 chr1:172615400-172617400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
11 chr1:172615400-172617600 Enhancers Primary T killer memory cells from peripheral blood blood
12 chr1:172615600-172616800 Enhancers Primary T helper 17 cells PMA-I stimulated --
13 chr1:172615600-172616800 Enhancers Thymus Thymus
14 chr1:172615600-172617200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
15 chr1:172615600-172617400 Enhancers Primary T helper naive cells from peripheral blood blood
16 chr1:172615600-172617600 Enhancers Primary T helper cells fromperipheralblood blood
17 chr1:172615600-172617600 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr1:172615800-172616800 Enhancers Primary T regulatory cells fromperipheralblood blood
19 chr1:172615800-172616800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:172615800-172617200 Enhancers Primary T cells from cord blood blood
21 chr1:172615800-172618400 Enhancers Primary T cells fromperipheralblood blood
22 chr1:172615800-172618600 Enhancers Primary Natural Killer cells fromperipheralblood blood
23 chr1:172616000-172616800 Enhancers NH-A brain
24 chr1:172616200-172616800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:172616200-172616800 Enhancers Placenta Placenta
26 chr1:172616200-172617600 Enhancers Osteobl bone
27 chr1:172616600-172617800 Enhancers Dnd41 blood

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Last update: Aug 31, 2015