The 2.0 version of rSNPBase

Variant report

Variant rs2859239
Chromosome Location chr1:172622892-172622893
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:22 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172608800-172624000 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:172613600-172623400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
3 chr1:172613800-172623400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:172616800-172623600 Weak transcription NH-A brain
5 chr1:172616800-172627400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
6 chr1:172617400-172626800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
7 chr1:172617600-172623800 Weak transcription Osteobl bone
8 chr1:172617600-172626800 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr1:172620400-172623200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:172621400-172623600 Enhancers Dnd41 blood
11 chr1:172622000-172624400 Enhancers NHEK skin
12 chr1:172622400-172624000 Enhancers Primary T helper cells PMA-I stimulated --
13 chr1:172622400-172624200 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:172622400-172624400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
15 chr1:172622400-172626800 Weak transcription Left Ventricle heart
16 chr1:172622600-172623600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:172622600-172623600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:172622600-172623600 Weak transcription A549 lung
19 chr1:172622600-172627200 Weak transcription Primary T cells from cord blood blood
20 chr1:172622800-172623200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr1:172622800-172623200 Weak transcription HMEC breast
22 chr1:172622800-172627400 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015