Variant report

Variant	rs2859240
Chromosome Location	chr1:172624233-172624234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr1:172623538-172624261	SK-N-SH	brain:	n/a	n/a
2	RCOR1	chr1:172623566-172624304	IMR90	lung:	n/a	n/a
3	EP300	chr1:172623599-172624258	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:172621692..172624512-chr1:172626497..172629979,4	K562	blood:
2	chr1:172623804..172625687-chr12:112846730..112848894,2	MCF-7	breast:
3	chr1:172617279..172620543-chr1:172622244..172626720,4	K562	blood:
4	chr1:172612180..172615126-chr1:172623490..172625142,2	MCF-7	breast:

Variant related genes	Relation type
FASLG	TF binding region
ENSG00000089009	Chromatin interaction
ENSG00000117560	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041902	0.90[ASN][1000 genomes]
rs1041903	0.90[ASN][1000 genomes]
rs1041906	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1041907	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10753023	0.86[EUR][1000 genomes]
rs10798130	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10798133	0.86[EUR][1000 genomes]
rs1492899	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1492900	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1873794	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1873795	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1873796	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2021838	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2021839	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2131373	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2639615	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2639616	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2639617	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2639618	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859229	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2859232	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859233	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859234	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859235	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2859236	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2859237	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2859238	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2859239	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2859242	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2859245	0.86[EUR][1000 genomes]
rs2859246	0.84[EUR][1000 genomes]
rs2933547	0.87[EUR][1000 genomes]
rs3021335	0.87[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172616800-172627400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr1:172617400-172626800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:172617600-172626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:172622000-172624400	Enhancers	NHEK	skin
5	chr1:172622400-172624400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:172622400-172626800	Weak transcription	Left Ventricle	heart
7	chr1:172622600-172627200	Weak transcription	Primary T cells from cord blood	blood
8	chr1:172622800-172627400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr1:172623200-172624600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:172623200-172624600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:172623200-172625000	Enhancers	HMEC	breast
12	chr1:172623400-172624800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:172623600-172624400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:172623600-172624400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:172623600-172624400	Enhancers	A549	lung
16	chr1:172623600-172624400	Enhancers	HUVEC	blood vessel
17	chr1:172623600-172624400	Enhancers	NH-A	brain
18	chr1:172623600-172628000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr1:172623800-172627600	Weak transcription	K562	blood
20	chr1:172624000-172626800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr1:172624000-172631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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