Variant report

Variant	rs2859236
Chromosome Location	chr1:172619851-172619852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172604637..172606919-chr1:172618615..172620134,2	K562	blood:
2	chr1:172617279..172620543-chr1:172622244..172626720,4	K562	blood:
3	chr1:172615321..172617267-chr1:172618144..172620944,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1041902	0.95[ASN][1000 genomes]
rs1041903	0.95[ASN][1000 genomes]
rs1041906	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1041907	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10753023	0.84[EUR][1000 genomes]
rs10798130	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798133	0.84[EUR][1000 genomes]
rs1492899	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492900	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1873794	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1873795	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1873796	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2021838	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2021839	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2131373	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2639615	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2639616	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2639617	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2639618	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859228	0.81[CHB][hapmap]
rs2859229	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2859232	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859233	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859234	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859235	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859237	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859238	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859239	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2859240	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2859242	1.00[CEU][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2859245	0.85[EUR][1000 genomes]
rs2859246	0.82[EUR][1000 genomes]
rs2933547	0.85[EUR][1000 genomes]
rs3021335	0.85[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172608800-172624000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:172613200-172620200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:172613200-172620200	Weak transcription	HMEC	breast
4	chr1:172613600-172623400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:172613800-172623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:172616800-172620000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:172616800-172623600	Weak transcription	NH-A	brain
8	chr1:172616800-172627400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:172617200-172622400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:172617400-172622400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr1:172617400-172626800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:172617600-172623800	Weak transcription	Osteobl	bone
13	chr1:172617600-172626800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:172617800-172621400	Weak transcription	Dnd41	blood
15	chr1:172619800-172620400	Enhancers	NHEK	skin

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