The 2.0 version of rSNPBase

Variant report

Variant rs10798341
Chromosome Location chr1:175153843-175153844
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175129200-175159600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:175135000-175158400 Weak transcription Rectal Smooth Muscle rectum
3 chr1:175136000-175157600 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr1:175141000-175160200 Weak transcription HUVEC blood vessel
5 chr1:175141400-175158400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:175143000-175160800 Weak transcription Fetal Muscle Trunk muscle
7 chr1:175143600-175158000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:175146000-175157800 Genic enhancers Primary B cells from peripheral blood blood
9 chr1:175146200-175159400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr1:175146200-175159800 Weak transcription Stomach Smooth Muscle stomach
11 chr1:175146600-175155600 Weak transcription Ovary ovary
12 chr1:175146800-175160400 Weak transcription Fetal Intestine Large intestine
13 chr1:175147000-175155600 Weak transcription Fetal Muscle Leg muscle
14 chr1:175147000-175156200 Weak transcription Duodenum Mucosa Duodenum
15 chr1:175147200-175155600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:175147600-175160400 Weak transcription Colonic Mucosa Colon
17 chr1:175148200-175157400 Enhancers Primary T helper naive cells fromperipheralblood blood
18 chr1:175148200-175157600 Enhancers Primary T killer memory cells from peripheral blood blood
19 chr1:175148200-175157800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr1:175148400-175159200 Weak transcription Placenta Amnion Placenta Amnion
21 chr1:175148600-175154800 Genic enhancers Primary B cells from cord blood blood
22 chr1:175148800-175158000 Enhancers Primary T killer naive cells fromperipheralblood blood
23 chr1:175150400-175154000 Genic enhancers Primary T helper cells fromperipheralblood blood
24 chr1:175150400-175154200 Genic enhancers Primary T cells fromperipheralblood blood
25 chr1:175150800-175154000 Genic enhancers Breast Myoepithelial Primary Cells Breast
26 chr1:175150800-175154200 Enhancers Skeletal Muscle Female skeletal muscle
27 chr1:175151000-175154200 Genic enhancers Placenta Placenta
28 chr1:175151200-175155600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr1:175151400-175157400 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr1:175151400-175157400 Genic enhancers Primary T regulatory cells fromperipheralblood blood
31 chr1:175151600-175154000 Enhancers Left Ventricle heart
32 chr1:175151600-175154000 Genic enhancers Pancreas Pancrea
33 chr1:175152200-175154800 Enhancers Primary T helper cells PMA-I stimulated --
34 chr1:175152200-175154800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:175152200-175156000 Strong transcription NHEK skin
36 chr1:175152200-175159600 Enhancers Skeletal Muscle Male skeletal muscle
37 chr1:175152400-175157200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr1:175152600-175155600 Weak transcription K562 blood
39 chr1:175152800-175154000 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr1:175153000-175154000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:175153000-175155600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr1:175153000-175155600 Weak transcription Spleen Spleen
43 chr1:175153000-175155800 Weak transcription Aorta Aorta
44 chr1:175153000-175156400 Weak transcription Fetal Stomach stomach
45 chr1:175153200-175154600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr1:175153200-175155200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:175153200-175155600 Weak transcription Fetal Intestine Small intestine
48 chr1:175153400-175154000 Enhancers Right Atrium heart
49 chr1:175153400-175154600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr1:175153400-175155600 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015