The 2.0 version of rSNPBase

Variant report

Variant rs2205603
Chromosome Location chr1:175159044-175159045
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175129200-175159600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:175141000-175160200 Weak transcription HUVEC blood vessel
3 chr1:175143000-175160800 Weak transcription Fetal Muscle Trunk muscle
4 chr1:175146200-175159400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr1:175146200-175159800 Weak transcription Stomach Smooth Muscle stomach
6 chr1:175146800-175160400 Weak transcription Fetal Intestine Large intestine
7 chr1:175147600-175160400 Weak transcription Colonic Mucosa Colon
8 chr1:175148400-175159200 Weak transcription Placenta Amnion Placenta Amnion
9 chr1:175152200-175159600 Enhancers Skeletal Muscle Male skeletal muscle
10 chr1:175153600-175159600 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:175153800-175160400 Enhancers Primary monocytes fromperipheralblood blood
12 chr1:175155600-175159200 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:175155600-175159600 Genic enhancers Placenta Placenta
14 chr1:175155800-175160000 Enhancers Pancreas Pancrea
15 chr1:175155800-175161000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:175156000-175159600 Genic enhancers Left Ventricle heart
17 chr1:175156200-175159200 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:175156600-175159600 Enhancers Skeletal Muscle Female skeletal muscle
19 chr1:175156800-175159800 Transcr. at gene 5' and 3' Primary B cells from cord blood blood
20 chr1:175157000-175160000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:175157400-175159400 Flanking Active TSS GM12878-XiMat blood
22 chr1:175157400-175159800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
23 chr1:175157400-175160000 Enhancers Thymus Thymus
24 chr1:175157400-175160600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
25 chr1:175157400-175160800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
26 chr1:175157400-175160800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
27 chr1:175157400-175161000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
28 chr1:175157600-175159600 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
29 chr1:175157600-175160400 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
30 chr1:175157600-175160600 Weak transcription Fetal Stomach stomach
31 chr1:175157600-175160800 Weak transcription Ovary ovary
32 chr1:175157600-175161600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
33 chr1:175157800-175159200 Flanking Active TSS Primary T cells fromperipheralblood blood
34 chr1:175157800-175160400 Transcr. at gene 5' and 3' Primary B cells from peripheral blood blood
35 chr1:175157800-175160800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
36 chr1:175157800-175160800 Enhancers Small Intestine intestine
37 chr1:175157800-175161000 Flanking Active TSS Primary T cells from cord blood blood
38 chr1:175157800-175161600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
39 chr1:175158000-175159600 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:175158000-175159800 Enhancers Pancreatic Islets Pancreatic Islet
41 chr1:175158000-175160400 Enhancers Fetal Thymus thymus
42 chr1:175158000-175160600 Enhancers Sigmoid Colon Sigmoid Colon
43 chr1:175158000-175160800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
44 chr1:175158000-175161000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
45 chr1:175158200-175160000 Weak transcription Fetal Intestine Small intestine
46 chr1:175158200-175161000 Enhancers Spleen Spleen
47 chr1:175158400-175159200 Flanking Active TSS Primary hematopoietic stem cells blood
48 chr1:175158400-175159400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:175158400-175159400 Active TSS Primary mononuclear cells fromperipheralblood Blood
50 chr1:175158400-175160400 Active TSS Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015