The 2.0 version of rSNPBase

Variant report

Variant rs6677935
Chromosome Location chr1:175160348-175160349
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:175143000-175160800 Weak transcription Fetal Muscle Trunk muscle
2 chr1:175146800-175160400 Weak transcription Fetal Intestine Large intestine
3 chr1:175147600-175160400 Weak transcription Colonic Mucosa Colon
4 chr1:175153800-175160400 Enhancers Primary monocytes fromperipheralblood blood
5 chr1:175155800-175161000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:175157400-175160600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
7 chr1:175157400-175160800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
8 chr1:175157400-175160800 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
9 chr1:175157400-175161000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
10 chr1:175157600-175160400 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
11 chr1:175157600-175160600 Weak transcription Fetal Stomach stomach
12 chr1:175157600-175160800 Weak transcription Ovary ovary
13 chr1:175157600-175161600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
14 chr1:175157800-175160400 Transcr. at gene 5' and 3' Primary B cells from peripheral blood blood
15 chr1:175157800-175160800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
16 chr1:175157800-175160800 Enhancers Small Intestine intestine
17 chr1:175157800-175161000 Flanking Active TSS Primary T cells from cord blood blood
18 chr1:175157800-175161600 Flanking Active TSS Primary T helper cells fromperipheralblood blood
19 chr1:175158000-175160400 Enhancers Fetal Thymus thymus
20 chr1:175158000-175160600 Enhancers Sigmoid Colon Sigmoid Colon
21 chr1:175158000-175160800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
22 chr1:175158000-175161000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
23 chr1:175158200-175161000 Enhancers Spleen Spleen
24 chr1:175158400-175160400 Active TSS Duodenum Smooth Muscle Duodenum
25 chr1:175158400-175161800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:175158400-175162800 Active TSS Rectal Smooth Muscle rectum
27 chr1:175158600-175160800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
28 chr1:175158600-175160800 Weak transcription Gastric stomach
29 chr1:175159200-175160800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:175159200-175162600 Active TSS Lung lung
31 chr1:175159400-175160400 Enhancers Primary hematopoietic stem cells short term culture blood
32 chr1:175159400-175160400 Enhancers Rectal Mucosa Donor 31 rectum
33 chr1:175159400-175160800 Flanking Active TSS Primary T cells fromperipheralblood blood
34 chr1:175159400-175160800 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
35 chr1:175159400-175161000 Flanking Active TSS Duodenum Mucosa Duodenum
36 chr1:175159400-175161200 Flanking Active TSS Adipose Nuclei Adipose
37 chr1:175159600-175160400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr1:175159600-175160400 Enhancers Right Atrium heart
39 chr1:175159600-175160600 Enhancers Colon Smooth Muscle Colon
40 chr1:175159600-175160800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr1:175159600-175160800 Bivalent/Poised TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:175159600-175160800 Flanking Active TSS HMEC breast
43 chr1:175159600-175160800 Enhancers K562 blood
44 chr1:175159600-175161200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
45 chr1:175159600-175161800 Flanking Active TSS Primary hematopoietic stem cells blood
46 chr1:175159600-175161800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:175159800-175160400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:175159800-175160400 Flanking Active TSS Psoas Muscle Psoas
49 chr1:175159800-175160600 Weak transcription H9 Cell Line embryonic stem cell
50 chr1:175159800-175160800 Enhancers Placenta Amnion Placenta Amnion

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Last update: Aug 31, 2015