Variant report

Variant	rs10817496
Chromosome Location	chr9:116398343-116398344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116383167..116386391-chr9:116389906..116398638,8	MCF-7	breast:
2	chr9:116392305..116395161-chr9:116397306..116400059,2	MCF-7	breast:
3	chr9:116396277..116398394-chr9:116409096..116411903,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10217237	1.00[ASN][1000 genomes]
rs10217750	1.00[ASN][1000 genomes]
rs10217756	1.00[ASN][1000 genomes]
rs10481640	1.00[ASN][1000 genomes]
rs10981794	1.00[ASN][1000 genomes]
rs10981840	1.00[ASN][1000 genomes]
rs10981841	1.00[ASN][1000 genomes]
rs10981843	1.00[ASN][1000 genomes]
rs10981844	1.00[ASN][1000 genomes]
rs10981845	1.00[ASN][1000 genomes]
rs10981846	1.00[ASN][1000 genomes]
rs10981847	1.00[ASN][1000 genomes]
rs10981850	1.00[ASN][1000 genomes]
rs12335991	1.00[ASN][1000 genomes]
rs12336983	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338221	1.00[ASN][1000 genomes]
rs12339851	1.00[ASN][1000 genomes]
rs12344964	1.00[ASN][1000 genomes]
rs16907354	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766289	1.00[ASN][1000 genomes]
rs28709996	1.00[ASN][1000 genomes]
rs36062487	1.00[ASN][1000 genomes]
rs41276817	1.00[ASN][1000 genomes]
rs41297197	1.00[ASN][1000 genomes]
rs4348575	1.00[ASN][1000 genomes]
rs4609260	1.00[ASN][1000 genomes]
rs511561	1.00[ASN][1000 genomes]
rs530456	1.00[ASN][1000 genomes]
rs538711	1.00[ASN][1000 genomes]
rs551960	1.00[ASN][1000 genomes]
rs55916010	1.00[ASN][1000 genomes]
rs56038206	1.00[ASN][1000 genomes]
rs57989349	1.00[ASN][1000 genomes]
rs586265	1.00[ASN][1000 genomes]
rs60302610	1.00[ASN][1000 genomes]
rs608290	1.00[ASN][1000 genomes]
rs611335	1.00[ASN][1000 genomes]
rs6478012	1.00[ASN][1000 genomes]
rs6478017	1.00[ASN][1000 genomes]
rs653971	1.00[ASN][1000 genomes]
rs664850	1.00[ASN][1000 genomes]
rs670719	1.00[ASN][1000 genomes]
rs7021491	1.00[ASN][1000 genomes]
rs7033679	1.00[ASN][1000 genomes]
rs72761905	1.00[ASN][1000 genomes]
rs72761964	1.00[ASN][1000 genomes]
rs72761969	1.00[ASN][1000 genomes]
rs72761971	1.00[ASN][1000 genomes]
rs72761973	1.00[ASN][1000 genomes]
rs72761978	1.00[ASN][1000 genomes]
rs72761995	1.00[ASN][1000 genomes]
rs7867203	1.00[ASN][1000 genomes]
rs7870265	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
4	nsv893749	chr9:116378759-116439749	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2560176	chr9:116397318-116399163	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2299262	chr9:116397488-116398704	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3482746	chr9:116397548-116398630	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3482747	chr9:116397600-116398600	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3482745	chr9:116397601-116398551	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3482748	chr9:116397664-116398527	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3482749	chr9:116397678-116398526	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv11509	chr9:116397774-116398539	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116385800-116402600	Weak transcription	Stomach Mucosa	stomach
2	chr9:116389800-116402800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:116392600-116399000	Enhancers	Fetal Muscle Leg	muscle
4	chr9:116393400-116399400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:116393600-116398400	Enhancers	Osteobl	bone
6	chr9:116393600-116399000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:116393800-116398800	Enhancers	Fetal Stomach	stomach
8	chr9:116394600-116399000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:116394800-116398400	Enhancers	HUVEC	blood vessel
10	chr9:116395000-116398600	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:116395200-116398800	Enhancers	Fetal Lung	lung
12	chr9:116396000-116398600	Enhancers	NH-A	brain
13	chr9:116396000-116398800	Enhancers	Psoas Muscle	Psoas
14	chr9:116396000-116399200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:116396200-116398400	Enhancers	HSMMtube	muscle
16	chr9:116396200-116398800	Enhancers	Right Atrium	heart
17	chr9:116396200-116398800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr9:116396200-116399000	Enhancers	Adipose Nuclei	Adipose
19	chr9:116396200-116399000	Enhancers	HSMM	muscle
20	chr9:116396200-116399400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:116396200-116399400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:116396400-116398800	Enhancers	Left Ventricle	heart
23	chr9:116396800-116398600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:116396800-116398600	Enhancers	Ovary	ovary
25	chr9:116396800-116398800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:116397000-116399600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:116397200-116398400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:116397200-116398600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:116397200-116398800	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr9:116397200-116400400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:116397200-116401200	Weak transcription	Spleen	Spleen
32	chr9:116397400-116398400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:116397400-116398400	Weak transcription	NHLF	lung
34	chr9:116397400-116398600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:116397600-116398600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:116397600-116403000	Weak transcription	Fetal Heart	heart
37	chr9:116397800-116400800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:116398000-116398800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:116398000-116399000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:116398000-116399000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:116398200-116398800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:116398200-116399000	Flanking Active TSS	HepG2	liver

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