Variant report
| Variant | rs28709996 |
|---|---|
| Chromosome Location | chr9:116243605-116243606 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:116227400-116263800 | Weak transcription | Colonic Mucosa | Colon |
| 2 | chr9:116228400-116245000 | Weak transcription | Fetal Intestine Large | intestine |
| 3 | chr9:116231600-116249800 | Weak transcription | Hela-S3 | cervix |
| 4 | chr9:116231800-116246600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 5 | chr9:116235000-116251200 | Weak transcription | Primary hematopoietic stem cells | blood |
| 6 | chr9:116236200-116252400 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 7 | chr9:116237000-116246200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 8 | chr9:116237600-116244800 | Weak transcription | Rectal Smooth Muscle | rectum |
| 9 | chr9:116239200-116250200 | Weak transcription | Psoas Muscle | Psoas |
| 10 | chr9:116239600-116245800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 11 | chr9:116240200-116245400 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
| 12 | chr9:116240400-116254600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 13 | chr9:116241200-116244000 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
| 14 | chr9:116241200-116252800 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 15 | chr9:116241600-116247800 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 16 | chr9:116241800-116245800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 17 | chr9:116241800-116246000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 18 | chr9:116241800-116248800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 19 | chr9:116241800-116252200 | Strong transcription | Fetal Intestine Small | intestine |
| 20 | chr9:116242000-116244600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 21 | chr9:116242000-116245600 | Weak transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 22 | chr9:116242000-116245800 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 23 | chr9:116242000-116246000 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 24 | chr9:116242000-116246000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 25 | chr9:116242000-116248000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 26 | chr9:116242000-116254200 | Weak transcription | Brain Germinal Matrix | brain |
| 27 | chr9:116242000-116254200 | Weak transcription | Fetal Thymus | thymus |
| 28 | chr9:116242000-116255200 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 29 | chr9:116242000-116263600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 30 | chr9:116242000-116266200 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 31 | chr9:116242200-116245600 | Weak transcription | Aorta | Aorta |
| 32 | chr9:116242200-116246200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 33 | chr9:116242400-116246000 | Weak transcription | Brain Anterior Caudate | brain |
| 34 | chr9:116242400-116246600 | Weak transcription | Stomach Mucosa | stomach |
| 35 | chr9:116242600-116246200 | Strong transcription | HepG2 | liver |
| 36 | chr9:116242600-116254200 | Weak transcription | Fetal Brain Female | brain |
| 37 | chr9:116242800-116243800 | Enhancers | Spleen | Spleen |
| 38 | chr9:116242800-116247000 | Enhancers | Pancreas | Pancrea |
| 39 | chr9:116243000-116244000 | Enhancers | Lung | lung |
| 40 | chr9:116243000-116244000 | Enhancers | Right Ventricle | heart |
| 41 | chr9:116243000-116244800 | Weak transcription | Fetal Heart | heart |
| 42 | chr9:116243000-116245600 | Strong transcription | Fetal Stomach | stomach |
| 43 | chr9:116243200-116243800 | Genic enhancers | Stomach Smooth Muscle | stomach |
| 44 | chr9:116243200-116245800 | Weak transcription | Left Ventricle | heart |
| 45 | chr9:116243200-116247800 | Weak transcription | Gastric | stomach |
| 46 | chr9:116243400-116243800 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
| 47 | chr9:116243400-116244000 | Enhancers | Liver | Liver |
| 48 | chr9:116243400-116244000 | Genic enhancers | A549 | lung |
| 49 | chr9:116243600-116243800 | Strong transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 50 | chr9:116243600-116243800 | Enhancers | Brain Hippocampus Middle | brain |
