Variant report

Variant	rs12338697
Chromosome Location	chr9:116329986-116329987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116328408..116331040-chr9:116340149..116343026,2	MCF-7	breast:
2	chr9:116329091..116332362-chr9:116341153..116344066,4	MCF-7	breast:
3	chr9:116328750..116330695-chr9:116334621..116337573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 227 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10116799	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10125960	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10217237	0.89[AFR][1000 genomes]
rs10217341	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10217750	0.81[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs10217756	0.89[AFR][1000 genomes]
rs10481640	0.89[AFR][1000 genomes]
rs10481676	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10481677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981789	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981793	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs10981794	0.81[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs10981803	0.86[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981807	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981808	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981814	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981815	1.00[ASW][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981816	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981817	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981819	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981825	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981826	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981828	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981829	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981830	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10981831	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981832	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981834	0.80[AFR][1000 genomes]
rs12335716	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12335991	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12336719	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12337340	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338221	0.87[AFR][1000 genomes]
rs12338588	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338701	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338788	0.86[ASW][hapmap];0.96[LWK][hapmap];0.94[YRI][hapmap]
rs12339493	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339501	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12339617	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12339851	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12340996	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341332	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341490	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12342508	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12342699	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343129	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343141	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343940	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12344334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12344578	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12344964	0.81[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12345524	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12345968	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12346076	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346087	0.93[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346939	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12347382	0.82[AFR][1000 genomes]
rs12347895	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12348214	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12348239	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349661	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12351728	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs12353541	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1890992	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2050865	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2050866	0.92[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28594159	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28694002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28709996	0.89[AFR][1000 genomes]
rs28714985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35270441	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35358414	0.80[EUR][1000 genomes]
rs35533905	0.80[EUR][1000 genomes]
rs3983381	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41301525	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41305473	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41313331	0.87[EUR][1000 genomes]
rs4596719	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4979257	0.83[GIH][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs55676913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55696921	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55714377	0.81[AFR][1000 genomes]
rs55777057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55805468	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55931715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55977108	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56155263	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56276438	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56390346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61749208	0.96[EUR][1000 genomes]
rs6478011	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478012	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs6478016	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6478017	0.86[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs6478022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6478023	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7018783	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020623	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7021491	0.86[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs7021688	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7023661	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7024445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024612	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024996	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025745	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026568	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026656	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027024	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027340	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7028327	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7029685	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7032311	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7033679	0.81[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs7037441	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7037761	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs7040031	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7040635	0.94[AFR][1000 genomes]
rs7041833	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042290	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042695	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042968	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7043140	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7043571	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7045347	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046202	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7046427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7047062	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048208	1.00[CEU][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048305	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7049221	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs72760092	0.90[EUR][1000 genomes]
rs72760093	0.89[EUR][1000 genomes]
rs72760096	0.85[AFR][1000 genomes]
rs72760097	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72761903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72761904	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72761905	0.89[AFR][1000 genomes]
rs72761906	0.82[AFR][1000 genomes]
rs72761963	0.82[AFR][1000 genomes]
rs72761964	0.89[AFR][1000 genomes]
rs72761965	0.84[AFR][1000 genomes]
rs72761966	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761968	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761969	0.89[AFR][1000 genomes]
rs72761971	0.89[AFR][1000 genomes]
rs72761972	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761973	0.89[AFR][1000 genomes]
rs72761978	0.89[AFR][1000 genomes]
rs72761982	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761985	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761987	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761988	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761992	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761997	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761999	0.90[AFR][1000 genomes]
rs72762002	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763803	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763806	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763816	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763827	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763828	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763831	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763832	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763841	0.96[AFR][1000 genomes]
rs72763842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763843	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763848	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763849	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763851	0.80[EUR][1000 genomes]
rs7848203	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7849841	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7851718	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7851937	1.00[ASW][hapmap];0.87[LWK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7852118	1.00[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7853373	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7853792	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7854197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7854524	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7855325	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855434	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7856515	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7856689	0.86[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs7857217	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs7857943	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7859047	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860673	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7861248	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7863159	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864467	0.86[ASW][hapmap];0.90[LWK][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs7864645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7864816	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs7865364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867353	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870142	0.81[AFR][1000 genomes]
rs7870227	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870265	0.86[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs7870451	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs7870912	0.86[ASW][hapmap];0.81[LWK][hapmap];0.89[YRI][hapmap]
rs7871186	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7872084	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7872192	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872283	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs867375	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs883025	1.00[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs884898	1.00[ASW][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs884899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9299215	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs944345	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs944346	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657641	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657658	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657659	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785299	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12338697	C9orf43	cis	lymphoblastoid	seeQTL

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116311600-116331600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:116323200-116334800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr9:116323200-116339000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:116323400-116336200	Weak transcription	Primary T cells from cord blood	blood
5	chr9:116323400-116339400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:116324000-116332800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:116325800-116339800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:116326200-116339600	Weak transcription	HUVEC	blood vessel
9	chr9:116326600-116331000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:116326600-116332400	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr9:116327800-116331200	Enhancers	Stomach Mucosa	stomach
12	chr9:116328000-116330000	Enhancers	Spleen	Spleen
13	chr9:116328200-116330000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr9:116328200-116330200	Enhancers	HepG2	liver
15	chr9:116328200-116332400	Enhancers	Fetal Muscle Leg	muscle
16	chr9:116328200-116332400	Enhancers	Psoas Muscle	Psoas
17	chr9:116328200-116332800	Enhancers	Placenta	Placenta
18	chr9:116328400-116330200	Enhancers	Pancreas	Pancrea
19	chr9:116328400-116330200	Enhancers	Small Intestine	intestine
20	chr9:116328400-116330800	Genic enhancers	Primary T cells fromperipheralblood	blood
21	chr9:116328400-116331400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:116328400-116331400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr9:116328400-116331800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:116328400-116332400	Enhancers	Right Atrium	heart
25	chr9:116328400-116332800	Enhancers	Esophagus	oesophagus
26	chr9:116328400-116339800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr9:116328600-116330000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:116328600-116330200	Enhancers	Colon Smooth Muscle	Colon
29	chr9:116328600-116330600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:116328600-116331200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:116328600-116331800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr9:116328600-116331800	Genic enhancers	Fetal Stomach	stomach
33	chr9:116328600-116332800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr9:116328600-116336600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:116328600-116339600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr9:116328800-116330800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:116328800-116330800	Enhancers	Colonic Mucosa	Colon
38	chr9:116328800-116331000	Enhancers	Duodenum Mucosa	Duodenum
39	chr9:116328800-116331800	Enhancers	Brain Angular Gyrus	brain
40	chr9:116328800-116331800	Enhancers	Brain Hippocampus Middle	brain
41	chr9:116328800-116332200	Enhancers	Fetal Brain Male	brain
42	chr9:116328800-116332600	Enhancers	Brain Substantia Nigra	brain
43	chr9:116328800-116332800	Enhancers	Brain Anterior Caudate	brain
44	chr9:116328800-116332800	Enhancers	Left Ventricle	heart
45	chr9:116328800-116332800	Enhancers	Right Ventricle	heart
46	chr9:116328800-116334200	Weak transcription	K562	blood
47	chr9:116328800-116336600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr9:116328800-116337000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:116329000-116330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:116329000-116330800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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