Variant report

Variant	rs12339851
Chromosome Location	chr9:116255225-116255226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116254507..116256265-chr9:116258071..116260770,2	MCF-7	breast:
2	chr9:116244673..116249213-chr9:116254294..116256965,4	K562	blood:
3	chr9:116245986..116247736-chr9:116254544..116256250,2	MCF-7	breast:

Extended variants
information (count: 210 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:205)

rs_ID	r²[population]
rs10125960	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10217237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217750	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10481676	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10481677	0.90[AFR][1000 genomes]
rs10817496	1.00[ASN][1000 genomes]
rs10981793	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10981794	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981803	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10981807	0.93[AFR][1000 genomes]
rs10981808	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10981814	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10981815	0.86[ASW][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs10981816	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10981817	0.81[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs10981819	0.86[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs10981820	0.93[AFR][1000 genomes]
rs10981821	0.93[AFR][1000 genomes]
rs10981825	0.91[AFR][1000 genomes]
rs10981826	0.91[AFR][1000 genomes]
rs10981827	0.91[AFR][1000 genomes]
rs10981830	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs10981832	0.86[AFR][1000 genomes]
rs10981840	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981841	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981843	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10981844	1.00[ASN][1000 genomes]
rs10981845	1.00[ASN][1000 genomes]
rs10981846	1.00[ASN][1000 genomes]
rs10981847	1.00[ASN][1000 genomes]
rs10981850	1.00[ASN][1000 genomes]
rs12335991	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336719	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12336983	1.00[ASN][1000 genomes]
rs12337340	0.86[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12338221	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338588	0.93[AFR][1000 genomes]
rs12338697	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12338701	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs12338788	1.00[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12339493	1.00[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12339617	0.81[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12340996	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12341332	0.81[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs12342508	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12342699	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap];0.93[AFR][1000 genomes]
rs12343129	1.00[ASW][hapmap];0.81[CEU][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs12343141	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12344334	0.91[AFR][1000 genomes]
rs12344578	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12344964	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345524	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12346076	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12346087	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12346939	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12347382	0.93[AFR][1000 genomes]
rs12347895	1.00[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12351728	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16907354	1.00[ASN][1000 genomes]
rs17766289	1.00[ASN][1000 genomes]
rs1890992	0.86[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs2050865	1.00[ASW][hapmap];0.80[CEU][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs2050866	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs28694002	0.93[AFR][1000 genomes]
rs28709996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28714985	0.93[AFR][1000 genomes]
rs35270441	0.97[AFR][1000 genomes]
rs36062487	1.00[ASN][1000 genomes]
rs3983381	0.81[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs41276817	1.00[ASN][1000 genomes]
rs41297197	1.00[ASN][1000 genomes]
rs41301525	0.90[AFR][1000 genomes]
rs41305473	0.90[AFR][1000 genomes]
rs4348575	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596719	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4609260	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4979257	0.93[LWK][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs511561	1.00[ASN][1000 genomes]
rs530456	1.00[ASN][1000 genomes]
rs538711	1.00[ASN][1000 genomes]
rs551960	1.00[ASN][1000 genomes]
rs55676913	1.00[AFR][1000 genomes]
rs55714377	0.91[AFR][1000 genomes]
rs55777057	0.91[AFR][1000 genomes]
rs55916010	1.00[ASN][1000 genomes]
rs55931715	0.91[AFR][1000 genomes]
rs55977108	0.93[AFR][1000 genomes]
rs56038206	1.00[ASN][1000 genomes]
rs56155263	0.90[AFR][1000 genomes]
rs56276438	0.91[AFR][1000 genomes]
rs56390346	0.91[AFR][1000 genomes]
rs57989349	1.00[ASN][1000 genomes]
rs586265	1.00[ASN][1000 genomes]
rs60302610	1.00[ASN][1000 genomes]
rs608290	1.00[ASN][1000 genomes]
rs611335	1.00[ASN][1000 genomes]
rs6478011	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6478012	1.00[CEU][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478016	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6478017	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478022	0.84[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs6478023	0.80[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs653971	1.00[ASN][1000 genomes]
rs664850	1.00[ASN][1000 genomes]
rs670719	1.00[ASN][1000 genomes]
rs7018783	0.81[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7020623	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7021491	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023661	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7024445	0.81[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs7024612	1.00[ASW][hapmap];0.96[LWK][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs7024996	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7025170	0.91[AFR][1000 genomes]
rs7025745	0.93[AFR][1000 genomes]
rs7026568	0.97[AFR][1000 genomes]
rs7026656	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7027024	0.80[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7027340	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7028327	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7029685	0.93[AFR][1000 genomes]
rs7033679	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7037441	0.86[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7037761	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7040031	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7040635	0.89[AFR][1000 genomes]
rs7041833	0.81[CEU][hapmap];0.84[YRI][hapmap]
rs7042290	1.00[AFR][1000 genomes]
rs7042695	0.80[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7042968	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7043140	0.81[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7045347	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7046202	0.81[CEU][hapmap];1.00[AFR][1000 genomes]
rs7046427	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7047062	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7048208	0.81[CEU][hapmap];0.81[AFR][1000 genomes]
rs7049221	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs72760096	0.96[AFR][1000 genomes]
rs72761903	0.96[AFR][1000 genomes]
rs72761905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761906	0.93[AFR][1000 genomes]
rs72761963	0.93[AFR][1000 genomes]
rs72761964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761965	0.94[AFR][1000 genomes]
rs72761966	0.97[AFR][1000 genomes]
rs72761969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72761987	0.97[AFR][1000 genomes]
rs72761992	0.93[AFR][1000 genomes]
rs72761994	0.93[AFR][1000 genomes]
rs72761995	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72761999	0.87[AFR][1000 genomes]
rs72762002	0.93[AFR][1000 genomes]
rs72763803	0.91[AFR][1000 genomes]
rs72763804	0.93[AFR][1000 genomes]
rs72763826	0.90[AFR][1000 genomes]
rs72763828	0.88[AFR][1000 genomes]
rs72763831	0.90[AFR][1000 genomes]
rs72763841	0.87[AFR][1000 genomes]
rs72763842	0.90[AFR][1000 genomes]
rs72763843	0.81[AFR][1000 genomes]
rs72763846	0.89[AFR][1000 genomes]
rs7848203	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7849841	1.00[AFR][1000 genomes]
rs7851718	0.86[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7851937	0.86[ASW][hapmap];0.87[LWK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs7852118	0.86[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7853373	0.93[AFR][1000 genomes]
rs7853792	0.88[YRI][hapmap];0.94[AFR][1000 genomes]
rs7854197	0.81[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7854524	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs7855325	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7855434	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7856689	1.00[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7857217	0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7857943	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7860673	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7861248	1.00[ASW][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7863159	1.00[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7864467	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7864645	1.00[AFR][1000 genomes]
rs7864816	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7867203	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867353	0.81[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7870142	0.91[AFR][1000 genomes]
rs7870227	0.86[ASW][hapmap];0.81[CEU][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes]
rs7870265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870451	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs7870912	1.00[ASW][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap]
rs7871186	1.00[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7872084	0.81[AFR][1000 genomes]
rs7872283	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs883025	0.86[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs884898	0.86[ASW][hapmap];0.81[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs884899	0.89[AFR][1000 genomes]
rs9299215	0.81[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs944345	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs944346	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs9657641	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs9657658	0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs9657659	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs9785299	0.94[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116227400-116263800	Weak transcription	Colonic Mucosa	Colon
2	chr9:116242000-116263600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:116242000-116266200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:116248200-116259400	Weak transcription	Gastric	stomach
5	chr9:116248600-116261600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:116248800-116261600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:116251000-116263800	Weak transcription	Esophagus	oesophagus
8	chr9:116251200-116263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:116251600-116283800	Weak transcription	Hela-S3	cervix
10	chr9:116251800-116261600	Weak transcription	HepG2	liver
11	chr9:116252000-116260200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:116252400-116273200	Weak transcription	Pancreas	Pancrea
13	chr9:116252600-116262000	Weak transcription	A549	lung
14	chr9:116253600-116256000	Enhancers	Right Ventricle	heart
15	chr9:116253600-116256200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr9:116253600-116256400	Enhancers	Fetal Muscle Leg	muscle
17	chr9:116253600-116256600	Enhancers	Fetal Heart	heart
18	chr9:116253600-116257000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:116253600-116257200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr9:116253800-116256000	Enhancers	Fetal Lung	lung
21	chr9:116254000-116259200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:116254200-116255400	Enhancers	Fetal Kidney	kidney
23	chr9:116254200-116255400	Enhancers	HUVEC	blood vessel
24	chr9:116254200-116255600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:116254200-116255800	Enhancers	Fetal Brain Female	brain
26	chr9:116254200-116256000	Enhancers	Fetal Thymus	thymus
27	chr9:116254200-116256000	Enhancers	HSMM	muscle
28	chr9:116254200-116256200	Enhancers	Brain Germinal Matrix	brain
29	chr9:116254200-116256200	Enhancers	Right Atrium	heart
30	chr9:116254400-116255400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr9:116254400-116255400	Enhancers	Adipose Nuclei	Adipose
32	chr9:116254400-116255400	Enhancers	Osteobl	bone
33	chr9:116254400-116255600	Enhancers	NH-A	brain
34	chr9:116254400-116255800	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr9:116254400-116256000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:116254400-116256000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:116254400-116256000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr9:116254400-116256200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr9:116254600-116255400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr9:116254600-116255400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:116254600-116255400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr9:116254600-116255400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:116254600-116255400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:116254600-116255400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:116254600-116255400	Enhancers	Rectal Smooth Muscle	rectum
46	chr9:116254600-116255400	Enhancers	NHDF-Ad	bronchial
47	chr9:116254600-116255600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr9:116254600-116255600	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr9:116254600-116255600	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr9:116254600-116255600	Enhancers	Primary hematopoietic stem cells	blood

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