The 2.0 version of rSNPBase

Variant report

Variant rs55916010
Chromosome Location chr9:116270216-116270217
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:116251600-116283800 Weak transcription Hela-S3 cervix
2 chr9:116252400-116273200 Weak transcription Pancreas Pancrea
3 chr9:116255600-116275800 Weak transcription Primary hematopoietic stem cells blood
4 chr9:116257400-116270800 Weak transcription Placenta Amnion Placenta Amnion
5 chr9:116259200-116274000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr9:116259200-116274200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr9:116262800-116274200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr9:116264000-116291200 Weak transcription H9 Cell Line embryonic stem cell
9 chr9:116264600-116271200 Enhancers Liver Liver
10 chr9:116264600-116271400 Genic enhancers Fetal Intestine Small intestine
11 chr9:116264800-116298400 Weak transcription Brain Germinal Matrix brain
12 chr9:116265200-116270800 Weak transcription Fetal Heart heart
13 chr9:116266000-116270400 Weak transcription GM12878-XiMat blood
14 chr9:116266400-116270800 Weak transcription NHLF lung
15 chr9:116266600-116270400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
16 chr9:116266600-116274200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
17 chr9:116266800-116271200 Genic enhancers Fetal Muscle Trunk muscle
18 chr9:116266800-116273600 Enhancers Right Atrium heart
19 chr9:116266800-116281600 Strong transcription Fetal Stomach stomach
20 chr9:116267000-116272200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr9:116267200-116270400 Weak transcription Brain Substantia Nigra brain
22 chr9:116267400-116270400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr9:116267400-116270400 Strong transcription Aorta Aorta
24 chr9:116267400-116274800 Genic enhancers Fetal Adrenal Gland Adrenal Gland
25 chr9:116267800-116270400 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr9:116267800-116270600 Weak transcription Ovary ovary
27 chr9:116268000-116275000 Genic enhancers HUVEC blood vessel
28 chr9:116268400-116277200 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr9:116268600-116270800 Genic enhancers Spleen Spleen
30 chr9:116268600-116278600 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr9:116268800-116270400 Weak transcription Small Intestine intestine
32 chr9:116269000-116270800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr9:116269000-116271200 Genic enhancers Skeletal Muscle Male skeletal muscle
34 chr9:116269000-116273200 Weak transcription Psoas Muscle Psoas
35 chr9:116269000-116288600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr9:116269200-116272000 Genic enhancers Fetal Intestine Large intestine
37 chr9:116269200-116273200 Weak transcription Brain Cingulate Gyrus brain
38 chr9:116269400-116270400 Strong transcription Fetal Thymus thymus
39 chr9:116269400-116270600 Strong transcription Colon Smooth Muscle Colon
40 chr9:116269400-116270800 Strong transcription Fetal Brain Female brain
41 chr9:116269400-116271200 Genic enhancers Right Ventricle heart
42 chr9:116269400-116271400 Enhancers Skeletal Muscle Female skeletal muscle
43 chr9:116269400-116271600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr9:116269400-116272200 Genic enhancers Cortex derived primary cultured neurospheres brain
45 chr9:116269400-116273600 Genic enhancers HepG2 liver
46 chr9:116269400-116288200 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr9:116269400-116303000 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr9:116269600-116270400 Weak transcription Brain Inferior Temporal Lobe brain
49 chr9:116269600-116270600 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr9:116269600-116276600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015