Variant report

Variant	rs511561
Chromosome Location	chr9:116363877-116363878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116353752..116357757-chr9:116360190..116364418,7	K562	blood:
2	chr9:116348874..116350912-chr9:116362853..116364416,2	MCF-7	breast:
3	chr9:116357889..116361731-chr9:116362609..116366505,5	MCF-7	breast:
4	chr9:116343200..116345201-chr9:116363106..116364913,2	MCF-7	breast:
5	chr9:116362421..116364215-chr9:116382528..116385259,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10217237	1.00[ASN][1000 genomes]
rs10217750	1.00[ASN][1000 genomes]
rs10217756	1.00[ASN][1000 genomes]
rs10481640	1.00[ASN][1000 genomes]
rs10817496	1.00[ASN][1000 genomes]
rs10981794	1.00[ASN][1000 genomes]
rs10981840	1.00[ASN][1000 genomes]
rs10981841	1.00[ASN][1000 genomes]
rs10981843	1.00[ASN][1000 genomes]
rs10981844	1.00[ASN][1000 genomes]
rs10981845	1.00[ASN][1000 genomes]
rs10981846	1.00[ASN][1000 genomes]
rs10981847	1.00[ASN][1000 genomes]
rs10981850	1.00[ASN][1000 genomes]
rs12335991	1.00[ASN][1000 genomes]
rs12336983	1.00[ASN][1000 genomes]
rs12338221	1.00[ASN][1000 genomes]
rs12339851	1.00[ASN][1000 genomes]
rs12344964	1.00[ASN][1000 genomes]
rs16907354	1.00[ASN][1000 genomes]
rs17766289	1.00[ASN][1000 genomes]
rs28709996	1.00[ASN][1000 genomes]
rs36062487	1.00[ASN][1000 genomes]
rs41276817	1.00[ASN][1000 genomes]
rs41297197	1.00[ASN][1000 genomes]
rs4348575	1.00[ASN][1000 genomes]
rs4609260	1.00[ASN][1000 genomes]
rs530456	1.00[ASN][1000 genomes]
rs538711	1.00[ASN][1000 genomes]
rs551960	1.00[ASN][1000 genomes]
rs55916010	1.00[ASN][1000 genomes]
rs56038206	1.00[ASN][1000 genomes]
rs57989349	1.00[ASN][1000 genomes]
rs586265	1.00[ASN][1000 genomes]
rs60302610	1.00[ASN][1000 genomes]
rs608290	1.00[ASN][1000 genomes]
rs611335	1.00[ASN][1000 genomes]
rs6478012	1.00[ASN][1000 genomes]
rs6478017	1.00[ASN][1000 genomes]
rs653971	1.00[ASN][1000 genomes]
rs664850	1.00[ASN][1000 genomes]
rs670719	1.00[ASN][1000 genomes]
rs7021491	1.00[ASN][1000 genomes]
rs7033679	1.00[ASN][1000 genomes]
rs72761905	1.00[ASN][1000 genomes]
rs72761964	1.00[ASN][1000 genomes]
rs72761969	1.00[ASN][1000 genomes]
rs72761971	1.00[ASN][1000 genomes]
rs72761973	1.00[ASN][1000 genomes]
rs72761978	1.00[ASN][1000 genomes]
rs72761995	1.00[ASN][1000 genomes]
rs7867203	1.00[ASN][1000 genomes]
rs7870265	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
6	nsv466509	chr9:116356516-116396098	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv615216	chr9:116356516-116396098	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv466510	chr9:116363877-116397397	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv615217	chr9:116363877-116397397	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116357400-116364800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:116357400-116364800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:116357800-116364400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:116358000-116371800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:116359800-116364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:116360000-116364000	Genic enhancers	NHLF	lung
7	chr9:116360000-116364200	Weak transcription	Fetal Thymus	thymus
8	chr9:116360200-116364000	Weak transcription	GM12878-XiMat	blood
9	chr9:116360200-116365400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:116360200-116366400	Enhancers	Placenta	Placenta
11	chr9:116360400-116364000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:116360400-116364200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:116360400-116364400	Weak transcription	Small Intestine	intestine
14	chr9:116360400-116364600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:116360400-116364600	Weak transcription	Fetal Brain Female	brain
16	chr9:116360400-116371800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:116360600-116364000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr9:116360600-116364000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:116360600-116364000	Weak transcription	Stomach Mucosa	stomach
20	chr9:116360600-116364200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:116360600-116365800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr9:116360600-116366000	Enhancers	Right Ventricle	heart
23	chr9:116360800-116364200	Weak transcription	Gastric	stomach
24	chr9:116360800-116364400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:116360800-116366000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:116360800-116366000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr9:116360800-116366000	Enhancers	NHDF-Ad	bronchial
28	chr9:116360800-116366600	Enhancers	Liver	Liver
29	chr9:116361000-116364000	Weak transcription	Colonic Mucosa	Colon
30	chr9:116361000-116364000	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:116361000-116364400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr9:116361000-116364400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:116361000-116364400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr9:116361000-116364600	Weak transcription	Brain Germinal Matrix	brain
35	chr9:116361000-116364600	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:116361000-116365600	Enhancers	Left Ventricle	heart
37	chr9:116361000-116366400	Enhancers	Fetal Muscle Leg	muscle
38	chr9:116361200-116364200	Weak transcription	Fetal Intestine Large	intestine
39	chr9:116361200-116364200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr9:116361200-116365600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:116361200-116365800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:116361200-116366600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr9:116361400-116364200	Weak transcription	Primary B cells from cord blood	blood
44	chr9:116361400-116366000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:116361400-116366000	Enhancers	Fetal Lung	lung
46	chr9:116361400-116367000	Enhancers	Adipose Nuclei	Adipose
47	chr9:116361600-116364800	Enhancers	Spleen	Spleen
48	chr9:116361600-116365000	Enhancers	HSMM	muscle
49	chr9:116361600-116365600	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr9:116361800-116365000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links