Variant report

Variant	rs7871186
Chromosome Location	chr9:116344213-116344214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:110)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:110 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr9:116343671-116344643	GM12878	blood:	n/a	n/a
2	IRF4	chr9:116344005-116344616	GM12878	blood:	n/a	chr9:116344270-116344291
3	SIN3A	chr9:116344179-116344557	GM12878	blood:	n/a	n/a
4	MYC	chr9:116344175-116344539	NB4	blood:	n/a	n/a
5	MAZ	chr9:116344005-116344746	GM12878	blood:	n/a	n/a
6	NR2F2	chr9:116344193-116344547	K562	blood:	n/a	n/a
7	SP1	chr9:116343944-116344548	GM12878	blood:	n/a	n/a
8	PAX5	chr9:116344107-116344547	GM12891	blood:	n/a	n/a
9	CUX1	chr9:116344138-116344572	GM12878	blood:	n/a	n/a
10	MTA3	chr9:116343586-116344817	GM12878	blood:	n/a	n/a
11	RAD21	chr9:116344200-116344588	IMR90	lung:	n/a	n/a
12	EBF1	chr9:116343774-116345182	GM12878	blood:	n/a	n/a
13	PAX5	chr9:116343925-116344698	GM12878	blood:	n/a	n/a
14	FOXM1	chr9:116343867-116344691	GM12878	blood:	n/a	n/a
15	RELA	chr9:116343525-116344618	GM15510	blood:	n/a	n/a
16	MAZ	chr9:116343893-116345093	IMR90	lung:	n/a	n/a
17	MYC	chr9:116344180-116344492	GM12878	blood:	n/a	n/a
18	USF1	chr9:116344210-116344548	GM12878	blood:	n/a	n/a
19	YY1	chr9:116343984-116344626	GM12878	blood:	n/a	n/a
20	IRF1	chr9:116344096-116344455	K562	blood:	n/a	chr9:116344270-116344291
21	MAX	chr9:116343572-116344580	GM12878	blood:	n/a	n/a
22	EP300	chr9:116343841-116344539	GM12878	blood:	n/a	n/a
23	RFX5	chr9:116344050-116344458	GM12878	blood:	n/a	n/a
24	IRF4	chr9:116344010-116344547	GM12878	blood:	n/a	chr9:116344270-116344291
25	BCL3	chr9:116344109-116344530	GM12878	blood:	n/a	n/a
26	YY1	chr9:116344127-116344528	GM12891	blood:	n/a	n/a
27	POU2F2	chr9:116343843-116344550	GM12891	blood:	n/a	n/a
28	BCLAF1	chr9:116344003-116344614	GM12878	blood:	n/a	n/a
29	MAX	chr9:116344158-116344566	NB4	blood:	n/a	n/a
30	RELA	chr9:116343713-116344650	GM18951	blood:	n/a	n/a
31	TCF12	chr9:116344015-116344687	GM12878	blood:	n/a	n/a
32	STAT5A	chr9:116343965-116344674	GM12878	blood:	n/a	n/a
33	TCF12	chr9:116344063-116344750	GM12878	blood:	n/a	n/a
34	PAX5	chr9:116344085-116344533	GM12878	blood:	n/a	n/a
35	POLR2A	chr9:116340489-116344674	Raji	blood:	n/a	n/a
36	SPI1	chr9:116344158-116344500	GM12878	blood:	n/a	n/a
37	PML	chr9:116344154-116344509	GM12878	blood:	n/a	n/a
38	CEBPB	chr9:116344013-116344715	GM12878	blood:	n/a	n/a
39	RAD21	chr9:116343922-116344590	GM12878	blood:	n/a	n/a
40	RAD21	chr9:116344158-116344651	GM12878	blood:	n/a	n/a
41	MAX	chr9:116342807-116344605	MCF-7	breast:	n/a	n/a
42	PAX5	chr9:116344119-116344503	GM12892	blood:	n/a	n/a
43	ATF2	chr9:116344053-116344631	GM12878	blood:	n/a	n/a
44	NR2F2	chr9:116343828-116344641	MCF-7	breast:	n/a	n/a
45	POLR2A	chr9:116342592-116344580	PBDE	blood:	n/a	n/a
46	RELA	chr9:116343891-116344668	GM19193	blood:	n/a	n/a
47	MXI1	chr9:116343853-116345107	GM12878	blood:	n/a	n/a
48	POU2F2	chr9:116344078-116344610	GM12878	blood:	n/a	n/a
49	EBF1	chr9:116343874-116344607	GM12878	blood:	n/a	n/a
50	RCOR1	chr9:116343640-116344997	IMR90	lung:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116222989..116229179-chr9:116341260..116348453,12	MCF-7	breast:
2	chr9:116223752..116229757-chr9:116340131..116348699,14	MCF-7	breast:
3	chr9:116101037..116103011-chr9:116343010..116344663,2	MCF-7	breast:
4	chr9:116241552..116244395-chr9:116341689..116345225,3	MCF-7	breast:
5	chr9:116171144..116172776-chr9:116342569..116344666,2	MCF-7	breast:
6	chr9:116036349..116038748-chr9:116343941..116345814,2	K562	blood:
7	chr9:116169791..116174768-chr9:116341586..116346658,6	MCF-7	breast:

No data

Variant related genes	Relation type
RGS3	TF binding region
ENSG00000138835	Chromatin interaction
ENSG00000148225	Chromatin interaction
ENSG00000136875	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000176386	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 228 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10116799	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs10125960	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10217237	0.90[AFR][1000 genomes]
rs10217341	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10217750	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs10217756	0.90[AFR][1000 genomes]
rs10481640	0.90[AFR][1000 genomes]
rs10481676	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10481677	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981789	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10981793	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs10981794	0.81[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs10981803	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981808	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981814	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981815	0.86[ASW][hapmap];0.86[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10981816	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981817	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981819	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981821	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981828	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981829	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981830	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10981831	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981832	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981834	0.82[AFR][1000 genomes]
rs12335716	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12335991	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12336719	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12337340	0.86[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338221	0.89[AFR][1000 genomes]
rs12338588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338697	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338701	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338788	1.00[ASW][hapmap];0.93[LWK][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs12339493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339501	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12339617	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12339851	1.00[ASW][hapmap];0.81[CEU][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12340996	1.00[CEU][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341332	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341490	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12342508	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12342699	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343129	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343141	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343940	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12344334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12344578	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12344964	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs12345524	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12345968	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12346076	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346087	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346939	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12347382	0.83[AFR][1000 genomes]
rs12347895	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12348214	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12348239	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12349661	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12351728	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs12353541	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1890992	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2050865	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2050866	0.92[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28594159	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28694002	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28709996	0.90[AFR][1000 genomes]
rs28714985	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35270441	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35358414	0.80[EUR][1000 genomes]
rs35533905	0.80[EUR][1000 genomes]
rs3983381	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41301525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41305473	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41313331	0.87[EUR][1000 genomes]
rs4596719	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4979257	0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs55676913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55696921	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55714377	0.82[AFR][1000 genomes]
rs55777057	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55805468	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55931715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55977108	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56155263	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56276438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56390346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61749208	0.96[EUR][1000 genomes]
rs6478011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478012	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs6478016	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6478017	1.00[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs6478022	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6478023	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7018783	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7021491	1.00[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7021688	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7023661	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7024445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024612	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024996	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026568	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026656	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027024	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027340	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7028327	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7029685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7032311	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7033679	0.81[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs7037441	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7037761	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs7040031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7040635	0.93[AFR][1000 genomes]
rs7041833	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042695	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042968	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs7043140	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7043571	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7045347	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046202	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7046427	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7047062	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048208	1.00[CEU][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7048305	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7049221	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs72760092	0.90[EUR][1000 genomes]
rs72760093	0.89[EUR][1000 genomes]
rs72760096	0.86[AFR][1000 genomes]
rs72760097	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72761903	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72761904	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72761905	0.90[AFR][1000 genomes]
rs72761906	0.83[AFR][1000 genomes]
rs72761963	0.83[AFR][1000 genomes]
rs72761964	0.90[AFR][1000 genomes]
rs72761965	0.85[AFR][1000 genomes]
rs72761966	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761968	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761969	0.90[AFR][1000 genomes]
rs72761971	0.90[AFR][1000 genomes]
rs72761972	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761973	0.90[AFR][1000 genomes]
rs72761978	0.90[AFR][1000 genomes]
rs72761982	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761985	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761987	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761988	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761994	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761997	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761999	0.89[AFR][1000 genomes]
rs72762002	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763803	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763804	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763806	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763816	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763827	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763828	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763832	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763841	0.97[AFR][1000 genomes]
rs72763842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763843	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763846	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763848	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763849	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763851	0.80[EUR][1000 genomes]
rs7848203	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7849841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7851718	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7851937	0.86[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7852118	0.86[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs7853373	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7853792	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7854197	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7854524	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7855325	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855434	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs7856515	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7856689	1.00[ASW][hapmap];0.93[LWK][hapmap];0.83[MKK][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs7857217	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs7857943	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7859047	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7860673	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7861248	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7863159	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864467	1.00[ASW][hapmap];0.86[LWK][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs7864645	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7864816	0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs7865364	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7867353	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870142	0.82[AFR][1000 genomes]
rs7870227	0.86[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870265	1.00[ASW][hapmap];0.81[CEU][hapmap];0.83[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs7870451	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs7870912	1.00[ASW][hapmap];0.89[YRI][hapmap]
rs7872084	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7872192	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872283	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs867375	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs883025	0.86[ASW][hapmap];0.96[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs884898	0.86[ASW][hapmap];0.84[LWK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs884899	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9299215	1.00[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs944345	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs944346	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657641	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657658	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9657659	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9785299	1.00[YRI][hapmap];0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7871186	C9orf43	cis	lymphoblastoid	seeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116335000-116346800	Enhancers	Fetal Heart	heart
2	chr9:116337000-116346400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:116337200-116349600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:116337600-116345800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:116338200-116346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:116338200-116353600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:116339000-116344800	Enhancers	Spleen	Spleen
8	chr9:116339000-116345400	Enhancers	Fetal Muscle Leg	muscle
9	chr9:116339000-116345600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:116339200-116345000	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:116339200-116345600	Enhancers	Placenta	Placenta
12	chr9:116339400-116344800	Enhancers	Right Atrium	heart
13	chr9:116339600-116345000	Enhancers	Right Ventricle	heart
14	chr9:116339600-116345000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr9:116339600-116345600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:116339600-116345800	Enhancers	Left Ventricle	heart
17	chr9:116339800-116344600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:116339800-116344600	Enhancers	Esophagus	oesophagus
19	chr9:116339800-116345000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:116339800-116345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:116339800-116345200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:116339800-116345200	Enhancers	Placenta Amnion	Placenta Amnion
23	chr9:116340200-116355400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:116340400-116345400	Enhancers	Fetal Lung	lung
25	chr9:116340600-116344800	Enhancers	Small Intestine	intestine
26	chr9:116340600-116345000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr9:116340800-116344600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr9:116341000-116344400	Enhancers	HMEC	breast
29	chr9:116341000-116344800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr9:116341200-116344600	Genic enhancers	Fetal Intestine Small	intestine
31	chr9:116341400-116344400	Enhancers	Psoas Muscle	Psoas
32	chr9:116341400-116344800	Flanking Active TSS	HSMM	muscle
33	chr9:116341600-116345400	Enhancers	NH-A	brain
34	chr9:116341600-116355800	Weak transcription	Fetal Brain Female	brain
35	chr9:116341800-116353600	Weak transcription	A549	lung
36	chr9:116342000-116345000	Flanking Active TSS	Dnd41	blood
37	chr9:116342000-116355400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:116342200-116344400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr9:116342200-116344800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr9:116342200-116346800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:116342200-116349600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:116342200-116352200	Weak transcription	Fetal Kidney	kidney
43	chr9:116342400-116344400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr9:116342400-116344600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:116342400-116346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:116342600-116344800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:116342800-116344800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr9:116342800-116344800	Genic enhancers	Fetal Stomach	stomach
49	chr9:116342800-116345400	Enhancers	Primary hematopoietic stem cells	blood
50	chr9:116342800-116345800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links