Variant report

Variant	rs41313331
Chromosome Location	chr9:116186544-116186545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116172825..116175945-chr9:116186389..116190565,3	K562	blood:
2	chr9:116125894..116128604-chr9:116186096..116187911,2	K562	blood:
3	chr9:116181013..116183324-chr9:116185795..116188100,3	K562	blood:
4	chr9:116184373..116186750-chr9:116189178..116191939,3	K562	blood:
5	chr9:116173439..116175990-chr9:116186543..116189619,3	MCF-7	breast:
6	chr9:116111702..116114290-chr9:116184822..116187394,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157653	Chromatin interaction
ENSG00000119411	Chromatin interaction
ENSG00000148229	Chromatin interaction

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs10116799	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10125960	0.86[EUR][1000 genomes]
rs10217341	0.89[EUR][1000 genomes]
rs10481676	0.86[EUR][1000 genomes]
rs10481677	0.86[EUR][1000 genomes]
rs10981789	0.91[EUR][1000 genomes]
rs10981803	0.86[EUR][1000 genomes]
rs10981807	0.86[EUR][1000 genomes]
rs10981808	0.86[EUR][1000 genomes]
rs10981814	0.86[EUR][1000 genomes]
rs10981816	0.86[EUR][1000 genomes]
rs10981817	0.86[EUR][1000 genomes]
rs10981819	0.86[EUR][1000 genomes]
rs10981820	0.86[EUR][1000 genomes]
rs10981821	0.86[EUR][1000 genomes]
rs10981825	0.89[EUR][1000 genomes]
rs10981826	0.89[EUR][1000 genomes]
rs10981827	0.89[EUR][1000 genomes]
rs10981828	0.90[EUR][1000 genomes]
rs10981829	0.89[EUR][1000 genomes]
rs10981831	0.89[EUR][1000 genomes]
rs10981832	0.85[EUR][1000 genomes]
rs12335716	0.91[EUR][1000 genomes]
rs12336719	0.86[EUR][1000 genomes]
rs12337340	0.87[EUR][1000 genomes]
rs12338588	0.86[EUR][1000 genomes]
rs12338697	0.87[EUR][1000 genomes]
rs12338701	0.87[EUR][1000 genomes]
rs12339493	0.87[EUR][1000 genomes]
rs12339501	0.89[EUR][1000 genomes]
rs12339617	0.86[EUR][1000 genomes]
rs12340996	0.86[EUR][1000 genomes]
rs12341332	0.87[EUR][1000 genomes]
rs12341490	0.89[EUR][1000 genomes]
rs12342508	0.86[EUR][1000 genomes]
rs12342699	0.86[EUR][1000 genomes]
rs12343129	0.87[EUR][1000 genomes]
rs12343141	0.86[EUR][1000 genomes]
rs12343940	0.91[EUR][1000 genomes]
rs12344334	0.89[EUR][1000 genomes]
rs12344578	0.86[EUR][1000 genomes]
rs12345524	0.86[EUR][1000 genomes]
rs12345968	0.89[EUR][1000 genomes]
rs12346076	0.86[EUR][1000 genomes]
rs12346087	0.87[EUR][1000 genomes]
rs12346939	0.86[EUR][1000 genomes]
rs12347895	0.87[EUR][1000 genomes]
rs12348214	0.89[EUR][1000 genomes]
rs12348239	0.87[EUR][1000 genomes]
rs12349661	0.89[EUR][1000 genomes]
rs12353541	0.89[EUR][1000 genomes]
rs1890992	0.89[EUR][1000 genomes]
rs2050865	0.86[EUR][1000 genomes]
rs2050866	0.84[EUR][1000 genomes]
rs28594159	0.87[EUR][1000 genomes]
rs28694002	0.86[EUR][1000 genomes]
rs28714985	0.86[EUR][1000 genomes]
rs35270441	0.86[EUR][1000 genomes]
rs35358414	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35533905	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3983381	0.89[EUR][1000 genomes]
rs41301525	0.87[EUR][1000 genomes]
rs41305473	0.84[EUR][1000 genomes]
rs4596719	0.86[EUR][1000 genomes]
rs55676913	0.86[EUR][1000 genomes]
rs55696921	0.89[EUR][1000 genomes]
rs55777057	0.89[EUR][1000 genomes]
rs55805468	0.89[EUR][1000 genomes]
rs55931715	0.89[EUR][1000 genomes]
rs55977108	0.86[EUR][1000 genomes]
rs56155263	0.89[EUR][1000 genomes]
rs56276438	0.89[EUR][1000 genomes]
rs56390346	0.89[EUR][1000 genomes]
rs61749208	0.89[EUR][1000 genomes]
rs6478011	0.89[EUR][1000 genomes]
rs6478016	0.86[EUR][1000 genomes]
rs6478022	0.89[EUR][1000 genomes]
rs6478023	0.89[EUR][1000 genomes]
rs7018783	0.86[EUR][1000 genomes]
rs7020623	0.86[EUR][1000 genomes]
rs7021688	0.97[EUR][1000 genomes]
rs7023661	0.86[EUR][1000 genomes]
rs7024445	0.89[EUR][1000 genomes]
rs7024612	0.89[EUR][1000 genomes]
rs7024996	0.89[EUR][1000 genomes]
rs7025170	0.89[EUR][1000 genomes]
rs7025745	0.86[EUR][1000 genomes]
rs7026568	0.86[EUR][1000 genomes]
rs7026656	0.86[EUR][1000 genomes]
rs7027024	0.86[EUR][1000 genomes]
rs7027340	0.86[EUR][1000 genomes]
rs7028327	0.86[EUR][1000 genomes]
rs7029685	0.86[EUR][1000 genomes]
rs7032311	0.87[EUR][1000 genomes]
rs7037441	0.86[EUR][1000 genomes]
rs7040031	0.86[EUR][1000 genomes]
rs7041833	0.86[EUR][1000 genomes]
rs7042290	0.86[EUR][1000 genomes]
rs7042695	0.86[EUR][1000 genomes]
rs7043140	0.86[EUR][1000 genomes]
rs7043571	0.89[EUR][1000 genomes]
rs7045347	0.86[EUR][1000 genomes]
rs7046202	0.89[EUR][1000 genomes]
rs7046427	0.86[EUR][1000 genomes]
rs7047062	0.87[EUR][1000 genomes]
rs7048208	0.87[EUR][1000 genomes]
rs7048305	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72760092	0.97[EUR][1000 genomes]
rs72760093	0.96[EUR][1000 genomes]
rs72760097	0.91[EUR][1000 genomes]
rs72761903	0.90[EUR][1000 genomes]
rs72761904	0.91[EUR][1000 genomes]
rs72761966	0.86[EUR][1000 genomes]
rs72761968	0.89[EUR][1000 genomes]
rs72761972	0.89[EUR][1000 genomes]
rs72761982	0.89[EUR][1000 genomes]
rs72761985	0.87[EUR][1000 genomes]
rs72761987	0.86[EUR][1000 genomes]
rs72761988	0.89[EUR][1000 genomes]
rs72761992	0.86[EUR][1000 genomes]
rs72761994	0.86[EUR][1000 genomes]
rs72761997	0.87[EUR][1000 genomes]
rs72762002	0.84[EUR][1000 genomes]
rs72763803	0.86[EUR][1000 genomes]
rs72763804	0.86[EUR][1000 genomes]
rs72763806	0.87[EUR][1000 genomes]
rs72763816	0.89[EUR][1000 genomes]
rs72763826	0.87[EUR][1000 genomes]
rs72763827	0.89[EUR][1000 genomes]
rs72763828	0.87[EUR][1000 genomes]
rs72763831	0.87[EUR][1000 genomes]
rs72763832	0.89[EUR][1000 genomes]
rs72763842	0.87[EUR][1000 genomes]
rs72763843	0.87[EUR][1000 genomes]
rs72763846	0.87[EUR][1000 genomes]
rs72763848	0.90[EUR][1000 genomes]
rs72763849	0.90[EUR][1000 genomes]
rs7848203	0.89[EUR][1000 genomes]
rs7849841	0.89[EUR][1000 genomes]
rs7851718	0.86[EUR][1000 genomes]
rs7853373	0.86[EUR][1000 genomes]
rs7853792	0.86[EUR][1000 genomes]
rs7854197	0.86[EUR][1000 genomes]
rs7855325	0.86[EUR][1000 genomes]
rs7856515	0.87[EUR][1000 genomes]
rs7857943	0.87[EUR][1000 genomes]
rs7859047	0.91[EUR][1000 genomes]
rs7860673	0.86[EUR][1000 genomes]
rs7861248	0.89[EUR][1000 genomes]
rs7863159	0.87[EUR][1000 genomes]
rs7864645	0.89[EUR][1000 genomes]
rs7865364	0.87[EUR][1000 genomes]
rs7867353	0.86[EUR][1000 genomes]
rs7870227	0.86[EUR][1000 genomes]
rs7870451	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7871186	0.87[EUR][1000 genomes]
rs7872084	0.82[EUR][1000 genomes]
rs7872192	0.89[EUR][1000 genomes]
rs7872283	0.86[EUR][1000 genomes]
rs867375	0.90[EUR][1000 genomes]
rs884899	0.87[EUR][1000 genomes]
rs9299215	0.86[EUR][1000 genomes]
rs944345	0.87[EUR][1000 genomes]
rs944346	0.87[EUR][1000 genomes]
rs9657641	0.87[EUR][1000 genomes]
rs9657658	0.87[EUR][1000 genomes]
rs9657659	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116174200-116187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116180400-116186600	Weak transcription	Primary B cells from cord blood	blood
3	chr9:116184600-116199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr9:116186000-116199200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:116186400-116187000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:116186400-116187000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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