Variant report

Variant	rs7870451
Chromosome Location	chr9:116188578-116188579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116172825..116175945-chr9:116186389..116190565,3	K562	blood:
2	chr9:116171368..116175084-chr9:116187738..116191861,8	MCF-7	breast:
3	chr9:116173439..116175990-chr9:116186543..116189619,3	MCF-7	breast:
4	chr9:116186574..116188949-chr9:116192871..116195192,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148229	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 209 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:208)

rs_ID	r²[population]
rs10116799	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10125960	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10217237	0.82[AFR][1000 genomes]
rs10217341	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10217750	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs10217756	0.82[AFR][1000 genomes]
rs10481640	0.82[AFR][1000 genomes]
rs10481676	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10481677	0.87[EUR][1000 genomes]
rs10981789	0.90[EUR][1000 genomes]
rs10981793	0.95[YRI][hapmap]
rs10981794	0.95[YRI][hapmap]
rs10981803	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs10981807	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981808	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981814	1.00[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981815	0.89[YRI][hapmap]
rs10981816	0.91[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981817	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981819	0.92[CEU][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs10981820	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981821	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10981825	0.90[EUR][1000 genomes]
rs10981826	0.90[EUR][1000 genomes]
rs10981827	0.90[EUR][1000 genomes]
rs10981828	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10981829	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10981830	0.90[YRI][hapmap]
rs10981831	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10981832	0.86[EUR][1000 genomes]
rs12335716	0.90[EUR][1000 genomes]
rs12335991	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs12336719	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs12337340	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs12338221	0.80[AFR][1000 genomes]
rs12338588	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12338697	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs12338701	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs12338788	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs12339493	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs12339501	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12339617	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12339851	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs12340996	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs12341332	0.92[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs12341490	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12342508	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12342699	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12343129	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs12343141	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12343940	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12344334	0.90[EUR][1000 genomes]
rs12344578	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12344964	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs12345524	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12345968	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12346076	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12346087	0.86[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs12346939	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12347895	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs12348214	0.87[EUR][1000 genomes]
rs12348239	0.89[EUR][1000 genomes]
rs12349661	0.87[EUR][1000 genomes]
rs12351728	0.95[YRI][hapmap]
rs12353541	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1890992	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs2050865	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs2050866	0.84[CEU][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes]
rs28594159	0.86[EUR][1000 genomes]
rs28694002	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs28709996	0.82[AFR][1000 genomes]
rs28714985	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35270441	0.87[EUR][1000 genomes]
rs35358414	0.91[EUR][1000 genomes]
rs35533905	0.91[EUR][1000 genomes]
rs3983381	0.92[CEU][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs41301525	0.89[EUR][1000 genomes]
rs41305473	0.85[EUR][1000 genomes]
rs41313331	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4596719	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs4979257	0.89[YRI][hapmap]
rs55676913	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs55696921	0.87[EUR][1000 genomes]
rs55777057	0.90[EUR][1000 genomes]
rs55805468	0.87[EUR][1000 genomes]
rs55931715	0.90[EUR][1000 genomes]
rs55977108	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs56155263	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56276438	0.90[EUR][1000 genomes]
rs56390346	0.90[EUR][1000 genomes]
rs61749208	0.87[EUR][1000 genomes]
rs6478011	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6478016	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6478017	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs6478022	0.91[CEU][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs6478023	0.92[CEU][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs7018783	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7020623	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7021491	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs7021688	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7023661	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7024445	0.92[CEU][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs7024612	0.92[CEU][hapmap];0.89[YRI][hapmap];0.90[EUR][1000 genomes]
rs7024996	0.92[CEU][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs7025170	0.90[EUR][1000 genomes]
rs7025745	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7026568	0.87[EUR][1000 genomes]
rs7026656	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs7027024	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs7027340	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7028327	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7029685	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7032311	0.86[EUR][1000 genomes]
rs7033679	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs7037441	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7037761	0.95[YRI][hapmap]
rs7040031	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7041833	0.92[CEU][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs7042290	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7042695	0.85[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7042968	0.95[YRI][hapmap]
rs7043140	0.92[CEU][hapmap];0.95[YRI][hapmap];0.87[EUR][1000 genomes]
rs7043571	0.87[EUR][1000 genomes]
rs7045347	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7046202	0.92[CEU][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7046427	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7047062	0.92[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs7048208	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs7048305	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7049221	0.90[YRI][hapmap]
rs72760092	0.96[EUR][1000 genomes]
rs72760093	0.94[EUR][1000 genomes]
rs72760097	0.90[EUR][1000 genomes]
rs72761903	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72761904	0.90[EUR][1000 genomes]
rs72761905	0.82[AFR][1000 genomes]
rs72761964	0.82[AFR][1000 genomes]
rs72761966	0.87[EUR][1000 genomes]
rs72761968	0.87[EUR][1000 genomes]
rs72761969	0.82[AFR][1000 genomes]
rs72761971	0.82[AFR][1000 genomes]
rs72761972	0.87[EUR][1000 genomes]
rs72761973	0.82[AFR][1000 genomes]
rs72761978	0.82[AFR][1000 genomes]
rs72761982	0.87[EUR][1000 genomes]
rs72761985	0.89[EUR][1000 genomes]
rs72761987	0.87[EUR][1000 genomes]
rs72761988	0.87[EUR][1000 genomes]
rs72761992	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72761994	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72761997	0.86[EUR][1000 genomes]
rs72762002	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72763803	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72763804	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72763806	0.86[EUR][1000 genomes]
rs72763816	0.90[EUR][1000 genomes]
rs72763826	0.89[EUR][1000 genomes]
rs72763827	0.87[EUR][1000 genomes]
rs72763828	0.89[EUR][1000 genomes]
rs72763831	0.89[EUR][1000 genomes]
rs72763832	0.87[EUR][1000 genomes]
rs72763842	0.89[EUR][1000 genomes]
rs72763843	0.89[EUR][1000 genomes]
rs72763846	0.89[EUR][1000 genomes]
rs72763848	0.89[EUR][1000 genomes]
rs72763849	0.89[EUR][1000 genomes]
rs7848203	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7849841	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7851718	0.92[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7851937	0.89[YRI][hapmap]
rs7852118	0.95[YRI][hapmap]
rs7853373	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7853792	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7854197	0.92[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7854524	0.90[YRI][hapmap]
rs7855325	0.91[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7855434	0.95[YRI][hapmap]
rs7856515	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7856689	0.95[YRI][hapmap]
rs7857217	0.90[YRI][hapmap]
rs7857943	0.92[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs7859047	0.90[EUR][1000 genomes]
rs7860673	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7861248	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7863159	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs7864467	0.95[YRI][hapmap]
rs7864645	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7864816	0.95[YRI][hapmap]
rs7865364	0.89[EUR][1000 genomes]
rs7867353	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7870227	0.92[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7870265	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs7870912	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7871186	0.92[CEU][hapmap];0.89[YRI][hapmap];0.89[EUR][1000 genomes]
rs7872084	0.84[EUR][1000 genomes]
rs7872192	0.87[EUR][1000 genomes]
rs7872283	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs867375	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs883025	0.89[YRI][hapmap]
rs884898	0.84[YRI][hapmap]
rs884899	0.89[EUR][1000 genomes]
rs9299215	0.92[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs944345	0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs944346	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs9657641	0.92[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs9657658	0.91[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs9657659	0.92[CEU][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs9785299	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116184600-116199200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:116186000-116199200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:116187000-116189000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:116187000-116189200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:116187600-116189800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:116188200-116189200	Enhancers	Primary hematopoietic stem cells	blood
7	chr9:116188200-116189200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links