Variant report

Variant	rs12344578
Chromosome Location	chr9:116285083-116285084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 223 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs10116799	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs10125960	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10217237	0.93[AFR][1000 genomes]
rs10217341	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10217750	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10217756	0.93[AFR][1000 genomes]
rs10481640	0.93[AFR][1000 genomes]
rs10481676	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981789	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981793	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981794	0.81[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10981803	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981808	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981814	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981815	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs10981816	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981817	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981819	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981825	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981826	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981827	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981828	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981829	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981830	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs10981831	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981832	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12335716	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12335991	0.80[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12336719	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337340	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338221	0.91[AFR][1000 genomes]
rs12338588	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12338697	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338701	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338788	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12339493	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12339501	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12339617	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12339851	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12340996	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12341332	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341490	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12342508	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12342699	1.00[CEU][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343129	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343141	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12343940	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12344334	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12344964	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12345524	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12345968	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12346076	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12346087	0.93[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346939	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12347382	0.86[AFR][1000 genomes]
rs12347895	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12348214	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12348239	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12349661	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12351728	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12353541	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1890992	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2050865	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050866	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28594159	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28694002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28709996	0.93[AFR][1000 genomes]
rs28714985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35270441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3983381	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41301525	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41305473	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41313331	0.86[EUR][1000 genomes]
rs4596719	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4979257	0.94[YRI][hapmap];0.89[AFR][1000 genomes]
rs55676913	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55696921	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55714377	0.85[AFR][1000 genomes]
rs55777057	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55805468	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55931715	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55977108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56155263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56276438	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56390346	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61749208	0.91[EUR][1000 genomes]
rs6478011	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6478012	0.81[CEU][hapmap]
rs6478016	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478017	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs6478022	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6478023	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7018783	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7020623	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021491	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7021688	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7023661	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024445	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7024612	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7024996	1.00[CEU][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7025170	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7025745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7026656	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027024	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7027340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7028327	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7029685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7032311	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7033679	0.81[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7037441	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7037761	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7040031	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7040635	0.96[AFR][1000 genomes]
rs7041833	1.00[CEU][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042695	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7042968	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7043140	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043571	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7045347	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7046202	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7046427	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7047062	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7048208	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7048305	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7049221	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs72760092	0.89[EUR][1000 genomes]
rs72760093	0.87[EUR][1000 genomes]
rs72760096	0.89[AFR][1000 genomes]
rs72760097	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761903	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761904	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761905	0.93[AFR][1000 genomes]
rs72761906	0.86[AFR][1000 genomes]
rs72761963	0.86[AFR][1000 genomes]
rs72761964	0.93[AFR][1000 genomes]
rs72761965	0.87[AFR][1000 genomes]
rs72761966	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761968	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761969	0.93[AFR][1000 genomes]
rs72761971	0.93[AFR][1000 genomes]
rs72761972	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761973	0.93[AFR][1000 genomes]
rs72761978	0.93[AFR][1000 genomes]
rs72761982	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761985	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72761987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761988	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761997	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72761999	0.94[AFR][1000 genomes]
rs72762002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763806	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763816	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763826	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763827	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763828	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763832	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763841	0.92[AFR][1000 genomes]
rs72763842	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763846	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763848	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763849	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7848203	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7849841	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7851718	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7851937	0.94[YRI][hapmap];0.94[AFR][1000 genomes]
rs7852118	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7853373	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7853792	1.00[CEU][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854197	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854524	0.95[YRI][hapmap];0.92[AFR][1000 genomes]
rs7855325	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7855434	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7856515	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7856689	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7857217	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs7857943	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7859047	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7860673	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861248	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7863159	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7864467	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7864645	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7864816	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7865364	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7867203	0.82[AFR][1000 genomes]
rs7867353	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870142	0.85[AFR][1000 genomes]
rs7870227	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7870265	0.81[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7870451	0.92[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7870912	0.94[YRI][hapmap]
rs7871186	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7872084	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7872192	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7872283	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs867375	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs883025	0.94[YRI][hapmap];0.96[AFR][1000 genomes]
rs884898	0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs884899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9299215	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs944345	0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs944346	1.00[CEU][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9657641	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9657658	1.00[CEU][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9657659	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9785299	0.95[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116264000-116291200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:116264800-116298400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:116269000-116288600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:116269400-116288200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:116269400-116303000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr9:116269600-116298400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:116270400-116289200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:116270400-116290600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:116270800-116285200	Weak transcription	Brain Substantia Nigra	brain
10	chr9:116270800-116285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:116271000-116285200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:116271000-116285600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:116273600-116285400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:116273600-116287000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:116276600-116285800	Genic enhancers	HUVEC	blood vessel
16	chr9:116277200-116285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:116277200-116298600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:116277600-116298600	Weak transcription	Fetal Brain Female	brain
19	chr9:116278200-116287200	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:116278800-116285600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:116280600-116287000	Enhancers	Small Intestine	intestine
22	chr9:116281000-116285200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr9:116281400-116286800	Genic enhancers	Left Ventricle	heart
24	chr9:116281600-116285200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr9:116281600-116288000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:116282000-116285200	Enhancers	HSMM	muscle
27	chr9:116282000-116287800	Enhancers	HSMMtube	muscle
28	chr9:116282200-116287000	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:116282200-116288400	Weak transcription	Fetal Kidney	kidney
30	chr9:116282600-116285200	Weak transcription	NHLF	lung
31	chr9:116282600-116285800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr9:116282600-116286000	Weak transcription	NHDF-Ad	bronchial
33	chr9:116282800-116285200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:116282800-116285200	Weak transcription	Pancreas	Pancrea
35	chr9:116282800-116285600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:116282800-116295600	Strong transcription	HepG2	liver
37	chr9:116283000-116285400	Weak transcription	Osteobl	bone
38	chr9:116283000-116285600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr9:116283000-116285800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:116283200-116285400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr9:116283200-116286400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr9:116283400-116285200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:116283400-116285200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr9:116283400-116285400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:116283400-116285400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr9:116283400-116285800	Enhancers	Fetal Thymus	thymus
47	chr9:116283400-116286200	Weak transcription	NH-A	brain
48	chr9:116283400-116287400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:116283400-116288000	Genic enhancers	Fetal Intestine Small	intestine
50	chr9:116283600-116285200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links