Variant report

Variant	rs10981828
Chromosome Location	chr9:116327122-116327123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr9:116326989-116328088	ECC-1	luminal epithelium:	n/a	chr9:116327720-116327729
2	POLR2A	chr9:116326999-116328220	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr9:116327115-116327478	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr9:116327085-116327691	ProgFib	skin:	n/a	n/a
5	POLR2A	chr9:116327063-116327405	GM12878	blood:	n/a	n/a
6	CCNT2	chr9:116327086-116327538	K562	blood:	n/a	n/a
7	RAD21	chr9:116327030-116328062	IMR90	lung:	n/a	chr9:116327093-116327103
8	POLR2A	chr9:116327066-116327980	Gliobla	brain:	n/a	n/a
9	CTCF	chr9:116327100-116327250	BE2_C	brain:	n/a	n/a
10	POLR2A	chr9:116326850-116327676	SK-N-MC	brain:	n/a	n/a
11	POLR2A	chr9:116327070-116328143	ECC-1	luminal epithelium:	n/a	n/a
12	SPI1	chr9:116326645-116327193	HL-60	blood:	n/a	n/a
13	POLR2A	chr9:116326775-116328208	U87	brain:	n/a	n/a
14	STAT3	chr9:116327065-116327265	MCF10A-Er-Src	breast:	n/a	chr9:116327185-116327197
15	POLR2A	chr9:116327113-116328809	GM12878	blood:	n/a	n/a
16	EP300	chr9:116327024-116327274	K562	blood:	n/a	n/a
17	MAZ	chr9:116326830-116328067	K562	blood:	n/a	chr9:116327720-116327729
18	CTCF	chr9:116327040-116327190	SAEC	small airway:	n/a	n/a
19	RCOR1	chr9:116326854-116328156	K562	blood:	n/a	n/a
20	POLR2A	chr9:116326856-116327947	U87	brain:	n/a	n/a
21	POLR2A	chr9:116326844-116328146	U87	brain:	n/a	n/a
22	JUND	chr9:116327056-116328002	K562	blood:	n/a	n/a
23	TCF12	chr9:116326954-116327937	ECC-1	luminal epithelium:	n/a	chr9:116326974-116326981
24	GABPA	chr9:116327011-116327434	H1-hESC	embryonic stem cell:	n/a	n/a
25	ZNF143	chr9:116327099-116327973	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr9:116327044-116327450	ECC-1	luminal epithelium:	n/a	n/a
27	MYC	chr9:116327028-116328403	K562	blood:	n/a	chr9:116327720-116327729
28	CTCF	chr9:116326980-116327130	AG10803	skin:	n/a	n/a
29	EP300	chr9:116326847-116328235	ECC-1	luminal epithelium:	n/a	n/a
30	POLR2A	chr9:116326918-116328082	H1-hESC	embryonic stem cell:	n/a	n/a
31	UBTF	chr9:116326777-116328056	K562	blood:	n/a	n/a
32	SIN3A	chr9:116326835-116328044	H1-hESC	embryonic stem cell:	n/a	n/a
33	TCF12	chr9:116326881-116328157	ECC-1	luminal epithelium:	n/a	chr9:116326974-116326981
34	POLR2A	chr9:116326953-116327947	U87	brain:	n/a	n/a
35	TAF1	chr9:116326989-116328081	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr9:116327010-116328456	IMR90	lung:	n/a	n/a
37	ZNF263	chr9:116327002-116328084	K562	blood:	n/a	chr9:116327704-116327725

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116035314..116038256-chr9:116326581..116329349,2	K562	blood:
2	chr9:116172469..116174359-chr9:116325229..116328003,2	K562	blood:

Variant related genes	Relation type
RGS3	TF binding region
ENSG00000176386	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000136875	Chromatin interaction

Extended variants
information (count: 182 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs10116799	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs10125960	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10217341	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10481676	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10481677	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981789	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10981803	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981807	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981808	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981814	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981816	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981817	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981819	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981820	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981821	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10981825	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981826	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981827	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981829	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981831	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981832	0.94[EUR][1000 genomes]
rs10981839	0.81[EUR][1000 genomes]
rs12335716	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12336719	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12337340	0.92[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12338588	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12338697	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12338701	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339493	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339501	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12339617	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12340996	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341332	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12341490	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12342508	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12342699	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343129	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12343141	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12343940	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12344334	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12344578	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12345524	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12345968	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346076	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12346087	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12346939	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12347895	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12348214	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12348239	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12349661	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12353541	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1890992	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2050865	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2050866	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28594159	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28694002	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28714985	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35270441	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35358414	0.83[EUR][1000 genomes]
rs35533905	0.83[EUR][1000 genomes]
rs3983381	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41301525	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41305473	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs41313331	0.90[EUR][1000 genomes]
rs4596719	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4979257	0.83[GIH][hapmap]
rs55676913	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55696921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55777057	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55805468	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55931715	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55977108	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56155263	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56276438	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56390346	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61749208	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6478011	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6478012	0.83[GIH][hapmap]
rs6478016	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6478017	0.83[GIH][hapmap]
rs6478022	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6478023	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7018783	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020623	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7021491	0.83[GIH][hapmap]
rs7021688	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7023661	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7024445	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024612	0.92[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7024996	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025170	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025745	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026568	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026656	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027024	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7027340	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7028327	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7029685	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7032311	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7037441	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7040031	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7041833	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042290	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7042695	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7043140	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7043571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7045347	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046202	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7046427	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7047062	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7048208	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7048305	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72760092	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72760093	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72760097	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761903	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72761904	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761966	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761968	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761972	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761982	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761985	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761987	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761992	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761994	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761997	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72762002	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763803	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763804	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763806	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763816	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763826	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763828	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763842	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763843	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763846	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763848	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763849	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763851	0.83[EUR][1000 genomes]
rs72763859	0.81[EUR][1000 genomes]
rs72763861	0.81[EUR][1000 genomes]
rs7848203	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7849841	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7851718	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7853373	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7853792	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7854197	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7855325	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7856515	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7857943	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7859047	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7860673	0.92[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7861248	0.92[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7863159	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7864645	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7865364	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7867353	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870227	0.92[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7870265	0.83[GIH][hapmap]
rs7870451	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7871186	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7872084	0.92[EUR][1000 genomes]
rs7872192	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872283	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs867375	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs884899	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9299215	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs944345	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs944346	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9657641	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9657658	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9657659	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10981828	C9orf43	cis	lymphoblastoid	seeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116311600-116331600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:116323200-116328000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:116323200-116334800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr9:116323200-116339000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:116323400-116336200	Weak transcription	Primary T cells from cord blood	blood
6	chr9:116323400-116339400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:116324000-116332800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:116325200-116327200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:116325200-116327200	Enhancers	Brain Angular Gyrus	brain
10	chr9:116325200-116327200	Enhancers	Left Ventricle	heart
11	chr9:116325200-116327200	Enhancers	Right Atrium	heart
12	chr9:116325200-116327400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:116325200-116328400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr9:116325600-116327400	Enhancers	Lung	lung
15	chr9:116325800-116327200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:116325800-116339800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:116326000-116327200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:116326000-116327200	Genic enhancers	GM12878-XiMat	blood
19	chr9:116326200-116327200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:116326200-116327200	Enhancers	Colonic Mucosa	Colon
21	chr9:116326200-116327200	Enhancers	Placenta	Placenta
22	chr9:116326200-116327200	Enhancers	Ovary	ovary
23	chr9:116326200-116339600	Weak transcription	HUVEC	blood vessel
24	chr9:116326400-116327200	Weak transcription	Aorta	Aorta
25	chr9:116326400-116327200	Enhancers	Esophagus	oesophagus
26	chr9:116326400-116327600	Enhancers	Gastric	stomach
27	chr9:116326400-116328400	Weak transcription	Small Intestine	intestine
28	chr9:116326600-116327200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:116326600-116327200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:116326600-116327200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr9:116326600-116327400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr9:116326600-116327600	Bivalent Enhancer	Fetal Brain Male	brain
33	chr9:116326600-116327600	Flanking Active TSS	Osteobl	bone
34	chr9:116326600-116327800	Enhancers	Fetal Thymus	thymus
35	chr9:116326600-116327800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:116326600-116328600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr9:116326600-116329000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr9:116326600-116331000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:116326600-116332400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr9:116326800-116327200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
41	chr9:116326800-116327200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:116326800-116327200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:116326800-116327200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr9:116326800-116327200	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr9:116326800-116327200	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr9:116326800-116327200	Flanking Active TSS	Fetal Brain Female	brain
47	chr9:116326800-116327400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:116326800-116327400	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr9:116326800-116327400	Enhancers	Psoas Muscle	Psoas
50	chr9:116326800-116327400	Enhancers	K562	blood

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