Variant report

Variant	rs12344334
Chromosome Location	chr9:116323735-116323736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116321376..116324696-chr9:116326302..116330504,5	MCF-7	breast:
2	chr9:116321637..116324327-chr9:116325655..116328382,2	K562	blood:
3	chr9:116323155..116326442-chr9:116332944..116335753,3	MCF-7	breast:
4	chr9:116316766..116318974-chr9:116321066..116324135,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction

Extended variants
information (count: 225 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:219)

rs_ID	r²[population]
rs10116799	0.89[EUR][1000 genomes]
rs10125960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10217237	0.91[AFR][1000 genomes]
rs10217341	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10217750	0.91[AFR][1000 genomes]
rs10217756	0.91[AFR][1000 genomes]
rs10481640	0.91[AFR][1000 genomes]
rs10481676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10481677	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981789	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981793	0.89[AFR][1000 genomes]
rs10981794	0.89[AFR][1000 genomes]
rs10981803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981807	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981808	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981814	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981815	0.93[AFR][1000 genomes]
rs10981816	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981817	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981819	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981820	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981821	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10981828	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10981829	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981830	0.93[AFR][1000 genomes]
rs10981831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10981832	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12335716	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12335991	0.91[AFR][1000 genomes]
rs12336719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12337340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12338221	0.90[AFR][1000 genomes]
rs12338588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12338697	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12338701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12338788	0.82[AFR][1000 genomes]
rs12339493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12339501	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339851	0.91[AFR][1000 genomes]
rs12340996	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12341332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12341490	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12342508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12342699	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12343129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12343141	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12343940	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12344578	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12344964	0.91[AFR][1000 genomes]
rs12345524	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12345968	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12346076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12346087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12346939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12347382	0.85[AFR][1000 genomes]
rs12347895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12348214	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12348239	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12349661	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12351728	0.89[AFR][1000 genomes]
rs12353541	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1890992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2050866	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28594159	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28694002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28709996	0.91[AFR][1000 genomes]
rs28714985	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35270441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35358414	0.81[EUR][1000 genomes]
rs35533905	0.81[EUR][1000 genomes]
rs3983381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41301525	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs41305473	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41313331	0.89[EUR][1000 genomes]
rs4596719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4979257	0.90[AFR][1000 genomes]
rs55676913	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55696921	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55714377	0.83[AFR][1000 genomes]
rs55777057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55805468	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55931715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55977108	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56155263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56276438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61749208	0.94[EUR][1000 genomes]
rs6478011	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6478016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6478017	0.91[AFR][1000 genomes]
rs6478022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7018783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7020623	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7021491	0.91[AFR][1000 genomes]
rs7021688	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7023661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7024445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024996	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7025745	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7026568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7026656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7027024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7027340	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7028327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7029685	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7032311	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7033679	0.91[AFR][1000 genomes]
rs7037441	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7037761	0.86[AFR][1000 genomes]
rs7040031	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7040635	0.97[AFR][1000 genomes]
rs7041833	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7042290	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7042695	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7042968	0.96[AFR][1000 genomes]
rs7043140	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7043571	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7045347	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7046202	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7046427	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7047062	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7048208	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7048305	0.89[EUR][1000 genomes]
rs7049221	0.96[AFR][1000 genomes]
rs72760092	0.91[EUR][1000 genomes]
rs72760093	0.90[EUR][1000 genomes]
rs72760096	0.87[AFR][1000 genomes]
rs72760097	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72761903	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72761904	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72761905	0.91[AFR][1000 genomes]
rs72761906	0.85[AFR][1000 genomes]
rs72761963	0.85[AFR][1000 genomes]
rs72761964	0.91[AFR][1000 genomes]
rs72761965	0.86[AFR][1000 genomes]
rs72761966	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761968	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761969	0.91[AFR][1000 genomes]
rs72761971	0.91[AFR][1000 genomes]
rs72761972	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761973	0.91[AFR][1000 genomes]
rs72761978	0.91[AFR][1000 genomes]
rs72761982	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761985	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761988	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761992	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761994	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761997	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761999	0.93[AFR][1000 genomes]
rs72762002	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763803	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763804	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763806	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72763826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763827	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763831	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763832	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763841	0.93[AFR][1000 genomes]
rs72763842	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763843	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72763848	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763849	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763851	0.81[EUR][1000 genomes]
rs7848203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7849841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7851718	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7851937	0.93[AFR][1000 genomes]
rs7852118	0.96[AFR][1000 genomes]
rs7853373	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7853792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7854197	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7854524	0.93[AFR][1000 genomes]
rs7855325	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7855434	0.93[AFR][1000 genomes]
rs7856515	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7856689	0.87[AFR][1000 genomes]
rs7857217	0.85[AFR][1000 genomes]
rs7857943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7859047	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7860673	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7861248	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7863159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7864467	0.86[AFR][1000 genomes]
rs7864645	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7864816	0.89[AFR][1000 genomes]
rs7865364	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7867203	0.81[AFR][1000 genomes]
rs7867353	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7870142	0.83[AFR][1000 genomes]
rs7870227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7870265	0.90[AFR][1000 genomes]
rs7870451	0.90[EUR][1000 genomes]
rs7871186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7872084	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7872192	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7872283	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs867375	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs883025	0.97[AFR][1000 genomes]
rs884898	0.90[AFR][1000 genomes]
rs884899	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9299215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs944345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs944346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9657641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9657658	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9657659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9785299	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv893748	chr9:116308709-116421786	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116311200-116326600	Weak transcription	Fetal Thymus	thymus
2	chr9:116311400-116326200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:116311600-116326800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:116311600-116331600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:116319000-116326600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:116320400-116324000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:116321800-116325000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:116321800-116325200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:116321800-116325200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:116321800-116325600	Weak transcription	Aorta	Aorta
11	chr9:116321800-116325600	Weak transcription	Lung	lung
12	chr9:116321800-116325800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:116321800-116326000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:116321800-116326000	Strong transcription	Fetal Intestine Small	intestine
15	chr9:116321800-116326200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:116321800-116326400	Weak transcription	Esophagus	oesophagus
17	chr9:116321800-116326800	Weak transcription	HSMMtube	muscle
18	chr9:116322000-116325000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:116322000-116325000	Weak transcription	Fetal Stomach	stomach
20	chr9:116322000-116325200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr9:116322000-116325400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:116322000-116325400	Weak transcription	Fetal Lung	lung
23	chr9:116322000-116325800	Weak transcription	Small Intestine	intestine
24	chr9:116322000-116326200	Weak transcription	Colonic Mucosa	Colon
25	chr9:116322000-116326200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:116322000-116326400	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:116322000-116326600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:116322000-116326600	Weak transcription	NH-A	brain
29	chr9:116322000-116326800	Weak transcription	Psoas Muscle	Psoas
30	chr9:116322200-116324000	Weak transcription	HUVEC	blood vessel
31	chr9:116322200-116325200	Genic enhancers	Primary T cells fromperipheralblood	blood
32	chr9:116322200-116325800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:116322200-116325800	Weak transcription	NHDF-Ad	bronchial
34	chr9:116322200-116325800	Weak transcription	Osteobl	bone
35	chr9:116322200-116326000	Weak transcription	HepG2	liver
36	chr9:116322200-116326400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:116322200-116326400	Weak transcription	HSMM	muscle
38	chr9:116322200-116326800	Weak transcription	K562	blood
39	chr9:116322400-116325400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:116322600-116324200	Enhancers	Brain Substantia Nigra	brain
41	chr9:116322600-116325200	Weak transcription	Placenta	Placenta
42	chr9:116322600-116325600	Weak transcription	Stomach Mucosa	stomach
43	chr9:116322800-116324000	Weak transcription	NHLF	lung
44	chr9:116322800-116325000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr9:116322800-116325200	Weak transcription	Brain Angular Gyrus	brain
46	chr9:116322800-116325200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr9:116322800-116325200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:116322800-116325200	Weak transcription	Left Ventricle	heart
49	chr9:116322800-116325200	Weak transcription	Right Atrium	heart
50	chr9:116322800-116325200	Weak transcription	Right Ventricle	heart

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