Variant report

Variant	rs10981789
Chromosome Location	chr9:116222054-116222055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 169 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:167)

rs_ID	r²[population]
rs10116799	0.91[EUR][1000 genomes]
rs10125960	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10217341	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10481676	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10481677	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981803	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981807	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981808	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981814	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981816	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981817	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981819	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981820	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981821	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10981825	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981826	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981827	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10981829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10981832	0.87[EUR][1000 genomes]
rs12335716	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336719	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12337340	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12338588	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12338697	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12338701	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12339493	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12339501	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12339617	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12340996	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12341332	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12341490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12342508	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12342699	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12343129	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12343141	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12343940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12344334	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12344578	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12345524	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12345968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12346076	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12346087	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12346939	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12347895	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12348214	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12348239	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12349661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12353541	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1890992	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2050865	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2050866	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28594159	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28694002	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28714985	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35270441	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35358414	0.84[EUR][1000 genomes]
rs35533905	0.84[EUR][1000 genomes]
rs3983381	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41301525	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41305473	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs41313331	0.91[EUR][1000 genomes]
rs4596719	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55676913	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55696921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55777057	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55805468	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55931715	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55977108	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56155263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56276438	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56390346	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61749208	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6478011	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6478016	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6478022	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6478023	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7018783	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7020623	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7021688	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7023661	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7024445	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7024612	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7024996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7025170	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7025745	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7026568	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7026656	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7027024	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7027340	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7028327	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7029685	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7032311	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7037441	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7040031	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7041833	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7042290	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7042695	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7043140	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7043571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7045347	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7046202	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7046427	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7047062	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7048208	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7048305	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72760092	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72760093	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72760097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761903	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72761904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72761966	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761968	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761972	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761982	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761985	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72761987	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761988	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72761992	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761994	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72761997	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72762002	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763803	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763804	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72763806	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72763816	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72763826	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72763828	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763831	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72763842	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763843	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763846	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72763848	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763849	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7848203	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7849841	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7851718	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7853373	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7853792	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7854197	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7855325	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7856515	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7857943	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7859047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7860673	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7861248	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7863159	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864645	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7865364	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867353	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7870227	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7870451	0.90[EUR][1000 genomes]
rs7871186	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7872084	0.85[EUR][1000 genomes]
rs7872192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7872283	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs867375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs884899	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9299215	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs944345	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs944346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9657641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9657658	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9657659	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116216000-116225400	Weak transcription	Gastric	stomach
2	chr9:116217400-116225200	Weak transcription	Right Ventricle	heart
3	chr9:116217600-116225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:116218200-116225400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:116218600-116229200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:116218800-116224200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:116218800-116224800	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:116218800-116225200	Weak transcription	Fetal Intestine Small	intestine
9	chr9:116218800-116225200	Weak transcription	Small Intestine	intestine
10	chr9:116218800-116225400	Weak transcription	Pancreas	Pancrea
11	chr9:116218800-116225400	Weak transcription	Right Atrium	heart
12	chr9:116218800-116226000	Weak transcription	Fetal Kidney	kidney
13	chr9:116219000-116225400	Weak transcription	Fetal Intestine Large	intestine
14	chr9:116219400-116240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr9:116219600-116223600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:116219600-116225400	Weak transcription	Aorta	Aorta
17	chr9:116219800-116223600	Weak transcription	HepG2	liver
18	chr9:116219800-116225000	Weak transcription	Placenta	Placenta
19	chr9:116220000-116223200	Weak transcription	Fetal Heart	heart
20	chr9:116220200-116223400	Weak transcription	Primary hematopoietic stem cells	blood

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