The 2.0 version of rSNPBase

Variant report

Variant rs55696921
Chromosome Location chr9:116290763-116290764
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:116264000-116291200 Weak transcription H9 Cell Line embryonic stem cell
2 chr9:116264800-116298400 Weak transcription Brain Germinal Matrix brain
3 chr9:116269400-116303000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr9:116269600-116298400 Weak transcription H1 Cell Line embryonic stem cell
5 chr9:116277200-116298600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr9:116277600-116298600 Weak transcription Fetal Brain Female brain
7 chr9:116282800-116295600 Strong transcription HepG2 liver
8 chr9:116284600-116290800 Genic enhancers Fetal Stomach stomach
9 chr9:116286200-116291000 Enhancers Stomach Mucosa stomach
10 chr9:116286800-116293000 Genic enhancers Primary T cells fromperipheralblood blood
11 chr9:116287000-116290800 Genic enhancers Duodenum Mucosa Duodenum
12 chr9:116287000-116311600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
13 chr9:116287200-116290800 Enhancers Placenta Placenta
14 chr9:116287400-116290800 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr9:116287400-116291600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr9:116287400-116306600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr9:116287400-116309200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr9:116287600-116291600 Strong transcription Primary hematopoietic stem cells blood
19 chr9:116287600-116296800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr9:116287600-116302800 Strong transcription Fetal Intestine Large intestine
21 chr9:116287800-116291200 Weak transcription Liver Liver
22 chr9:116288000-116299200 Weak transcription Dnd41 blood
23 chr9:116288000-116308600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr9:116288200-116290800 Weak transcription Thymus Thymus
25 chr9:116288200-116291400 Genic enhancers Colonic Mucosa Colon
26 chr9:116288400-116292600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr9:116288400-116295400 Strong transcription Primary T helper 17 cells PMA-I stimulated --
28 chr9:116288400-116296400 Weak transcription Small Intestine intestine
29 chr9:116288600-116291400 Enhancers Skeletal Muscle Female skeletal muscle
30 chr9:116288800-116291000 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr9:116288800-116296000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
32 chr9:116288800-116296000 Weak transcription Fetal Muscle Leg muscle
33 chr9:116288800-116298000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr9:116288800-116308200 Strong transcription Primary T regulatory cells fromperipheralblood blood
35 chr9:116288800-116308200 Strong transcription HUVEC blood vessel
36 chr9:116289000-116292200 Weak transcription Adipose Nuclei Adipose
37 chr9:116289000-116296600 Genic enhancers Skeletal Muscle Male skeletal muscle
38 chr9:116289000-116306600 Strong transcription Primary T helper cells fromperipheralblood blood
39 chr9:116289000-116308400 Strong transcription GM12878-XiMat blood
40 chr9:116289200-116291600 Weak transcription Hela-S3 cervix
41 chr9:116289200-116295000 Strong transcription Fetal Muscle Trunk muscle
42 chr9:116289400-116291200 Enhancers Rectal Mucosa Donor 31 rectum
43 chr9:116289600-116291000 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr9:116289600-116291000 Genic enhancers Primary T killer naive cells fromperipheralblood blood
45 chr9:116289600-116291000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr9:116289600-116291000 Enhancers Esophagus oesophagus
47 chr9:116289600-116291400 Strong transcription Fetal Thymus thymus
48 chr9:116289600-116310000 Weak transcription Fetal Kidney kidney
49 chr9:116289800-116291200 Genic enhancers Sigmoid Colon Sigmoid Colon
50 chr9:116289800-116295200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015