Variant report

Variant	rs10828304
Chromosome Location	chr10:22646163-22646164
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:22646060-22646210	Caco-2	colon:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22645256..22647739-chr10:22650282..22653945,4	K562	blood:
2	chr10:22644273..22647184-chr10:22725817..22727697,2	MCF-7	breast:
3	chr10:22646085..22648146-chr10:22650978..22653545,2	K562	blood:
4	chr10:22630509..22632055-chr10:22645156..22646735,2	K562	blood:
5	chr10:22629144..22631056-chr10:22645618..22647420,2	MCF-7	breast:
6	chr10:22644324..22646396-chr10:22653772..22656334,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233451	TF binding region
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11012941	0.81[YRI][hapmap]
rs11012953	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012955	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs11012956	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012958	0.87[YRI][hapmap]
rs11012960	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012961	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012965	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012967	0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012973	0.83[AMR][1000 genomes]
rs12240474	1.00[YRI][hapmap]
rs12245533	0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12254277	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257095	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12257451	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258156	0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12258433	0.86[YRI][hapmap]
rs12259102	0.90[YRI][hapmap]
rs16922183	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026632	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6482207	0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7073585	0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7083243	0.83[AMR][1000 genomes]
rs7083939	0.80[AFR][1000 genomes]
rs7084083	0.86[AFR][1000 genomes]
rs7088499	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101082	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs729111	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893841	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7893987	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs7900105	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7904484	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22645400-22646200	Enhancers	K562	blood

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