Variant report

Variant	rs11012961
Chromosome Location	chr10:22641627-22641628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10828304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012953	0.83[AMR][1000 genomes]
rs11012955	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012956	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012960	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012965	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012967	0.83[AMR][1000 genomes]
rs11012973	0.83[AMR][1000 genomes]
rs12245533	0.83[AMR][1000 genomes]
rs12254277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257095	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12257451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258156	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16922183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026632	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6482207	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7073585	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7083243	0.83[AMR][1000 genomes]
rs7084083	0.81[AFR][1000 genomes]
rs7088499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101082	0.81[AFR][1000 genomes]
rs729111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893841	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7893987	0.82[AFR][1000 genomes]
rs7900105	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7904484	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22640600-22645400	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links