Variant report

Variant	rs6482207
Chromosome Location	chr10:22661587-22661588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22628102..22630219-chr10:22659589..22662443,2	MCF-7	breast:
2	chr10:22660334..22662365-chr10:22670302..22671932,2	K562	blood:
3	chr10:22659512..22661834-chr10:22669700..22671932,2	K562	blood:
4	chr10:22658208..22659865-chr10:22660271..22662801,2	K562	blood:
5	chr10:22610590..22612239-chr10:22659887..22662443,2	K562	blood:
6	chr10:22661284..22664222-chr10:22666749..22669347,3	K562	blood:
7	chr10:22658280..22661912-chr10:22679021..22682304,3	K562	blood:
8	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
9	chr10:22659391..22664168-chr10:22664639..22669197,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000077327	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10828303	0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10828304	0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012938	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012939	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012941	0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012942	0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012953	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012955	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012958	1.00[YRI][hapmap]
rs11012960	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012961	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012965	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012966	0.81[AFR][1000 genomes]
rs11012967	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012973	1.00[AMR][1000 genomes]
rs12240474	0.89[YRI][hapmap]
rs12240495	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12240577	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12245533	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254277	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12255961	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12257095	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs12257451	0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12258156	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259102	1.00[YRI][hapmap]
rs12263397	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263441	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263897	0.85[AMR][1000 genomes]
rs16922163	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16922183	0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2026632	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069551	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7071244	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7072756	0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073046	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073585	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080076	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs7082672	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7083243	1.00[AMR][1000 genomes]
rs7085030	0.85[AMR][1000 genomes]
rs7085161	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7086440	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7088499	0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs729111	0.88[YRI][hapmap];0.83[AMR][1000 genomes]
rs7893841	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900105	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904484	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913881	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916150	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22659400-22661800	Weak transcription	K562	blood
2	chr10:22659400-22663800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr10:22659600-22661600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:22659600-22663200	Weak transcription	Gastric	stomach
5	chr10:22659600-22663200	Weak transcription	HUVEC	blood vessel
6	chr10:22659600-22663600	Weak transcription	GM12878-XiMat	blood
7	chr10:22660000-22663600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:22660400-22663800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:22661200-22661600	Enhancers	Pancreas	Pancrea
10	chr10:22661400-22661800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:22661400-22662200	Enhancers	Psoas Muscle	Psoas

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