Variant report

Variant	rs7904484
Chromosome Location	chr10:22662947-22662948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22607419..22609653-chr10:22662165..22664852,2	K562	blood:
2	chr10:22662505..22664741-chr10:22676415..22678270,2	K562	blood:
3	chr10:22662789..22665601-chr10:22678591..22680549,3	K562	blood:
4	chr10:22661284..22664222-chr10:22666749..22669347,3	K562	blood:
5	chr10:22661423..22663974-chr10:22725265..22727574,2	MCF-7	breast:
6	chr10:22659391..22664168-chr10:22664639..22669197,6	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10828303	0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs10828304	0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012938	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs11012939	0.85[AMR][1000 genomes]
rs11012941	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs11012942	0.89[YRI][hapmap];0.85[AMR][1000 genomes]
rs11012953	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012955	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012956	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012958	1.00[YRI][hapmap]
rs11012960	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012961	0.83[AMR][1000 genomes]
rs11012965	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012966	0.81[AFR][1000 genomes]
rs11012967	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012973	1.00[AMR][1000 genomes]
rs12240474	0.87[YRI][hapmap]
rs12240495	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs12240577	0.85[AMR][1000 genomes]
rs12245533	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254277	0.83[AMR][1000 genomes]
rs12255961	0.85[AMR][1000 genomes]
rs12257095	0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs12257451	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs12258156	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259102	1.00[YRI][hapmap]
rs12263397	0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs12263441	0.85[AMR][1000 genomes]
rs12263897	0.85[AMR][1000 genomes]
rs16922163	0.85[AMR][1000 genomes]
rs16922183	0.87[YRI][hapmap];0.83[AMR][1000 genomes]
rs2026632	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482207	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069551	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs7071244	0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs7072756	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs7073046	0.92[YRI][hapmap];0.85[AMR][1000 genomes]
rs7073585	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080076	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs7082672	0.85[AMR][1000 genomes]
rs7083243	1.00[AMR][1000 genomes]
rs7085030	0.85[AMR][1000 genomes]
rs7085161	0.85[AMR][1000 genomes]
rs7086440	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs7088499	0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs729111	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs7893841	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900105	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913881	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916150	0.85[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22659400-22663800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:22659600-22663200	Weak transcription	Gastric	stomach
3	chr10:22659600-22663200	Weak transcription	HUVEC	blood vessel
4	chr10:22659600-22663600	Weak transcription	GM12878-XiMat	blood
5	chr10:22660000-22663600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:22660400-22663800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:22661600-22663800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:22662200-22663800	Weak transcription	K562	blood

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