Variant report

Variant	rs7080076
Chromosome Location	chr10:22619304-22619305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10828303	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11012938	0.87[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs11012939	0.91[AFR][1000 genomes]
rs11012941	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11012942	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11012944	0.86[AFR][1000 genomes]
rs11012953	0.83[AFR][1000 genomes]
rs11012955	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs11012956	0.86[AFR][1000 genomes]
rs11012958	0.91[YRI][hapmap]
rs11012960	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs11012965	0.86[LWK][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs11012967	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs12240495	0.87[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs12240577	0.91[AFR][1000 genomes]
rs12245533	0.87[LWK][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs12255961	0.91[AFR][1000 genomes]
rs12257095	1.00[MEX][hapmap]
rs12257451	1.00[MEX][hapmap]
rs12258156	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs12259102	0.86[ASW][hapmap];0.96[LWK][hapmap];0.90[YRI][hapmap]
rs12263397	0.91[YRI][hapmap];0.89[AFR][1000 genomes]
rs12263441	0.91[AFR][1000 genomes]
rs16922163	0.91[AFR][1000 genomes]
rs2026632	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs6482207	0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs7069551	0.87[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7071244	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7072756	0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7073046	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7073585	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs7082672	0.91[AFR][1000 genomes]
rs7085030	0.83[AFR][1000 genomes]
rs7085161	0.85[AFR][1000 genomes]
rs7086440	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs729111	1.00[MEX][hapmap]
rs7893841	0.93[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes]
rs7900105	0.93[LWK][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7904484	0.91[YRI][hapmap];0.80[AFR][1000 genomes]
rs7913881	0.99[AFR][1000 genomes]
rs7916150	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894953	chr10:22594765-22619304	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv894954	chr10:22594765-22621960	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv1817463	chr10:22594765-22626662	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv1820141	chr10:22597467-22625441	Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
18	nsv894959	chr10:22602013-22619304	ZNF genes & repeats Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
19	nsv550207	chr10:22605112-22631256	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
20	nsv825300	chr10:22619187-22620592	Weak transcription Strong transcription Enhancers	TF binding region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22615000-22622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:22615000-22622800	Weak transcription	Spleen	Spleen
3	chr10:22615000-22623400	Weak transcription	Gastric	stomach
4	chr10:22615200-22619600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:22615200-22619600	Weak transcription	Fetal Intestine Small	intestine
6	chr10:22615200-22620400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:22615200-22621000	Weak transcription	Fetal Stomach	stomach
8	chr10:22615200-22621400	Weak transcription	Esophagus	oesophagus
9	chr10:22615200-22622000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:22615200-22622800	Weak transcription	Colonic Mucosa	Colon
11	chr10:22615200-22622800	Weak transcription	Pancreas	Pancrea
12	chr10:22615200-22623000	Weak transcription	Ovary	ovary
13	chr10:22615200-22623000	Weak transcription	Right Ventricle	heart
14	chr10:22615400-22620200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:22615600-22619400	Strong transcription	Adipose Nuclei	Adipose
16	chr10:22615600-22620600	Strong transcription	Liver	Liver
17	chr10:22615800-22619400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:22615800-22619400	Strong transcription	Dnd41	blood
19	chr10:22615800-22621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:22615800-22621200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:22616000-22619400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:22616000-22619400	Strong transcription	Fetal Intestine Large	intestine
23	chr10:22616000-22619400	Strong transcription	Placenta	Placenta
24	chr10:22616000-22619400	Strong transcription	HSMM	muscle
25	chr10:22616000-22620800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:22616200-22619400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:22616200-22622600	Weak transcription	HepG2	liver
28	chr10:22616400-22619400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr10:22616400-22619400	Strong transcription	HMEC	breast
30	chr10:22616600-22619400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:22616600-22619400	Strong transcription	Osteobl	bone
32	chr10:22616800-22619400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:22616800-22619600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:22617000-22619400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr10:22617200-22619400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr10:22617200-22620800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:22617400-22619400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr10:22617400-22619400	Strong transcription	Duodenum Mucosa	Duodenum
39	chr10:22617400-22619400	Strong transcription	NH-A	brain
40	chr10:22617800-22619400	Strong transcription	NHDF-Ad	bronchial
41	chr10:22618000-22619400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr10:22618000-22619400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:22618000-22619400	Strong transcription	Fetal Brain Male	brain
44	chr10:22618200-22619400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:22618200-22619400	Strong transcription	Fetal Lung	lung
46	chr10:22618200-22619400	Strong transcription	Fetal Muscle Leg	muscle
47	chr10:22618200-22619400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr10:22618400-22621800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr10:22618400-22622800	Weak transcription	Lung	lung
50	chr10:22618600-22619400	Strong transcription	Fetal Heart	heart

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