Variant report

Variant	rs12263441
Chromosome Location	chr10:22592729-22592730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22590240..22592920-chr10:22595487..22597865,3	K562	blood:
2	chr10:22591497..22594135-chr10:22594589..22597796,4	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10828303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012944	0.89[AFR][1000 genomes]
rs11012953	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012955	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012956	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012960	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012965	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012967	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012973	0.85[AMR][1000 genomes]
rs12240495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245533	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12255961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258156	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026632	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6482207	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7069551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7071244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072756	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073585	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7080076	0.91[AFR][1000 genomes]
rs7082672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083243	0.85[AMR][1000 genomes]
rs7085030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893841	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900105	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7904484	0.85[AMR][1000 genomes]
rs7913881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22591200-22592800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:22591800-22592800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links