Variant report

Variant	rs7900105
Chromosome Location	chr10:22654675-22654676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22634612..22637334-chr10:22654163..22656267,2	MCF-7	breast:
2	chr10:22627550..22632320-chr10:22654167..22661190,8	K562	blood:
3	chr10:22654035..22655946-chr10:22725226..22727293,2	MCF-7	breast:
4	chr10:22644324..22646396-chr10:22653772..22656334,2	K562	blood:
5	chr10:22628117..22631621-chr10:22653691..22656096,3	K562	blood:
6	chr10:22629345..22632042-chr10:22652338..22654724,2	MCF-7	breast:
7	chr10:22650743..22652825-chr10:22653844..22655766,2	K562	blood:

Variant related genes	Relation type
ENSG00000272366	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10828303	0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10828304	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012938	0.93[LWK][hapmap];0.80[MKK][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012939	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012941	0.93[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012942	0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012953	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012955	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012958	1.00[YRI][hapmap]
rs11012960	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012961	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012965	1.00[ASW][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012966	0.87[AFR][1000 genomes]
rs11012967	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012973	1.00[AMR][1000 genomes]
rs12240474	0.85[YRI][hapmap]
rs12240495	0.93[LWK][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12240577	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12245533	1.00[ASW][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254277	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12255961	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12257095	0.86[ASW][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes]
rs12257451	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12258156	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259102	0.86[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap]
rs12263397	0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263441	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263897	0.85[AMR][1000 genomes]
rs16922163	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16922183	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2026632	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482207	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069551	0.96[LWK][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7071244	0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7072756	0.93[LWK][hapmap];0.81[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073046	0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073585	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080076	0.93[LWK][hapmap];0.84[MKK][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes]
rs7082672	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7083243	1.00[AMR][1000 genomes]
rs7085030	0.85[AMR][1000 genomes]
rs7085161	0.85[AMR][1000 genomes]
rs7086440	0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7088499	0.86[ASW][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs729111	0.86[ASW][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs7893841	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904484	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913881	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916150	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22654200-22655200	Enhancers	GM12878-XiMat	blood
2	chr10:22654400-22654800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:22654400-22655200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:22654600-22658800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:22654600-22659200	Weak transcription	Primary B cells from peripheral blood	blood

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