Variant report

Variant	rs11012960
Chromosome Location	chr10:22641337-22641338
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22640102..22643052-chr10:22654931..22656867,2	K562	blood:
2	chr10:22635801..22637889-chr10:22640627..22643492,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10828303	0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10828304	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012938	0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012939	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012941	0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012942	0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012953	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012955	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012958	1.00[YRI][hapmap]
rs11012961	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11012965	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012966	0.83[AFR][1000 genomes]
rs11012967	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012973	1.00[AMR][1000 genomes]
rs12240474	0.87[YRI][hapmap]
rs12240495	0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12240577	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12245533	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254277	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12255961	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12257095	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs12257451	0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12258156	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259102	1.00[YRI][hapmap]
rs12263397	0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263441	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263897	0.85[AMR][1000 genomes]
rs16922163	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16922183	0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2026632	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482207	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7069551	0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7071244	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7072756	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073046	0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7073585	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7080076	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs7082672	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7083243	1.00[AMR][1000 genomes]
rs7085030	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7085161	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7086440	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7088499	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs729111	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs7893841	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7900105	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904484	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7913881	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916150	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22640600-22645400	Weak transcription	K562	blood

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