Variant report

Variant	rs7913881
Chromosome Location	chr10:22621671-22621672
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMI1-4	chr10:22621333-22621916	ENSG00000272516.1
2	lnc-PIP4K2A-4	chr10:22621516-22621910	ENSG00000271981.1

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10828303	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012938	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012939	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012941	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012942	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012944	0.87[AFR][1000 genomes]
rs11012953	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012955	0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012956	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012958	0.92[YRI][hapmap]
rs11012960	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012965	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012967	0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012973	0.85[AMR][1000 genomes]
rs12240495	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240577	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245533	0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12255961	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258156	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12259102	0.90[YRI][hapmap]
rs12263397	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263441	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922163	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026632	0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6482207	0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7069551	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7071244	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072756	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073046	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073585	0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7080076	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs7082672	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7083243	0.85[AMR][1000 genomes]
rs7085030	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085161	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086440	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893841	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900105	0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7904484	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7916150	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894954	chr10:22594765-22621960	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv1817463	chr10:22594765-22626662	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv1820141	chr10:22597467-22625441	Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
17	nsv550207	chr10:22605112-22631256	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22615000-22622200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:22615000-22622800	Weak transcription	Spleen	Spleen
3	chr10:22615000-22623400	Weak transcription	Gastric	stomach
4	chr10:22615200-22622000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:22615200-22622800	Weak transcription	Colonic Mucosa	Colon
6	chr10:22615200-22622800	Weak transcription	Pancreas	Pancrea
7	chr10:22615200-22623000	Weak transcription	Ovary	ovary
8	chr10:22615200-22623000	Weak transcription	Right Ventricle	heart
9	chr10:22616200-22622600	Weak transcription	HepG2	liver
10	chr10:22618400-22621800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:22618400-22622800	Weak transcription	Lung	lung
12	chr10:22618600-22623800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:22618600-22624000	Weak transcription	Aorta	Aorta
14	chr10:22618800-22622800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:22619000-22622000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:22619000-22622000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:22619000-22622000	Weak transcription	Fetal Thymus	thymus
18	chr10:22619000-22622200	Weak transcription	K562	blood
19	chr10:22619000-22622600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:22619000-22622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:22619000-22622600	Weak transcription	HSMMtube	muscle
22	chr10:22619000-22622600	Weak transcription	NHLF	lung
23	chr10:22619000-22622800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:22619000-22622800	Weak transcription	Psoas Muscle	Psoas
25	chr10:22619000-22623200	Weak transcription	Brain Angular Gyrus	brain
26	chr10:22619000-22623600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr10:22619000-22624200	Weak transcription	A549	lung
28	chr10:22619200-22621800	Weak transcription	Primary B cells from cord blood	blood
29	chr10:22619200-22621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:22619200-22621800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:22619200-22621800	Weak transcription	HUVEC	blood vessel
32	chr10:22619200-22622000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:22619200-22622000	Weak transcription	GM12878-XiMat	blood
34	chr10:22619200-22622400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:22619200-22622400	Weak transcription	Fetal Kidney	kidney
36	chr10:22619200-22622600	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:22619200-22622600	Weak transcription	Brain Substantia Nigra	brain
38	chr10:22619200-22622600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:22619200-22622600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:22619200-22622800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:22619200-22622800	Weak transcription	NHEK	skin
42	chr10:22619200-22623000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:22619200-22623000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:22619200-22623000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:22619200-22623200	Weak transcription	Brain Anterior Caudate	brain
46	chr10:22619200-22623200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr10:22619200-22623600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr10:22619200-22628600	Weak transcription	Hela-S3	cervix
49	chr10:22619400-22621800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr10:22619400-22622000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links