Variant report

Variant	rs7082672
Chromosome Location	chr10:22601889-22601890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:22601884-22602076	K562	blood:	n/a	chr10:22602049-22602063 chr10:22602052-22602069
2	MAZ	chr10:22601855-22601951	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:22599841..22602684-chr10:23343184..23344928,2	K562	blood:
2	chr10:22517066..22519487-chr10:22600070..22601910,2	K562	blood:
3	chr10:22599562..22601940-chr10:22603817..22605478,3	MCF-7	breast:

Variant related genes	Relation type
COMMD3-BMI1	TF binding region
COMMD3	TF binding region
ENSG00000269897	Chromatin interaction
ENSG00000148444	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10828303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11012944	0.89[AFR][1000 genomes]
rs11012953	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012955	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012956	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012960	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012965	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012967	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11012973	0.85[AMR][1000 genomes]
rs12240495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245533	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12255961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258156	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16922163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2026632	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6482207	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7069551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7071244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7072756	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7073585	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7080076	0.91[AFR][1000 genomes]
rs7083243	0.85[AMR][1000 genomes]
rs7085030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7085161	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7086440	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893841	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7900105	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7904484	0.85[AMR][1000 genomes]
rs7913881	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7916150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825292	chr10:22560347-22642200	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv825293	chr10:22575226-22637618	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv825294	chr10:22590627-22644910	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv825295	chr10:22591275-22643207	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv825296	chr10:22591339-22638994	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894950	chr10:22591830-22639903	Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv894951	chr10:22594765-22616244	Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
8	nsv894952	chr10:22594765-22618544	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv894953	chr10:22594765-22619304	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv894954	chr10:22594765-22621960	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	esv1817463	chr10:22594765-22626662	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv894955	chr10:22594765-22631256	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv894956	chr10:22594765-22633193	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv894957	chr10:22594765-22637381	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	esv1816646	chr10:22594765-22639707	Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv894958	chr10:22594765-22639903	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv1791996	chr10:22595781-22616437	Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
18	nsv825297	chr10:22596793-22637576	Bivalent Enhancer Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
19	nsv825299	chr10:22596793-22638994	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
20	esv1820141	chr10:22597467-22625441	Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22599600-22602000	Enhancers	K562	blood
2	chr10:22601400-22604400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr10:22601800-22605000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links