Variant report

Variant	rs10881869
Chromosome Location	chr10:92718229-92718230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92717534..92719084-chr10:92723226..92725595,2	K562	blood:
2	chr10:92643704..92645965-chr10:92716834..92718862,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10748556	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10785983	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881862	0.87[AMR][1000 genomes]
rs10881872	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10881873	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11186372	0.83[AFR][1000 genomes]
rs11186374	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11186375	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11186376	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11186377	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11186388	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186394	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11186397	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11186407	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12217709	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12761951	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12774602	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12776792	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12779698	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12781271	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1334581	0.92[AFR][1000 genomes]
rs1334583	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1418814	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1439092	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1439093	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1439094	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1439095	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1561446	0.80[EUR][1000 genomes]
rs1919132	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178206	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4335456	0.84[AMR][1000 genomes]
rs4933201	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4933625	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4933628	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933629	0.87[AFR][1000 genomes]
rs4933631	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4933633	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4933634	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7079147	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7080368	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7081190	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7083742	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7088989	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7088999	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7094853	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7099299	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7909948	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7916703	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9732462	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92707600-92719400	Weak transcription	HMEC	breast
2	chr10:92707800-92719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
4	chr10:92716400-92719200	Weak transcription	Left Ventricle	heart
5	chr10:92716800-92719200	Strong transcription	Dnd41	blood
6	chr10:92717000-92719800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:92717400-92719000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:92717600-92718600	Weak transcription	Osteobl	bone
9	chr10:92717600-92719000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:92717600-92720000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:92717600-92721200	Weak transcription	Fetal Thymus	thymus
12	chr10:92717800-92718400	Weak transcription	HSMM	muscle

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