Variant report

Variant	rs7088989
Chromosome Location	chr10:92722797-92722798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10748556	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10785983	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881862	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10881869	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10881872	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881873	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11186374	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11186375	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11186376	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11186377	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11186388	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186394	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11186397	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11186407	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12217709	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12761951	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12774602	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12776792	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12779698	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12781271	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1334581	0.83[AMR][1000 genomes]
rs1334583	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1418814	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1439092	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1439093	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1439094	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1439095	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1561446	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1919132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2178206	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4335456	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4933201	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4933625	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4933628	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4933631	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4933633	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4933634	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7079147	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7080368	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7081190	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7083742	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088999	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7094853	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7099299	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747335	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7909948	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7916703	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9732462	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92719000-92723200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:92719600-92724000	Weak transcription	Left Ventricle	heart
4	chr10:92720400-92723400	Weak transcription	Right Atrium	heart
5	chr10:92720600-92725200	Weak transcription	Fetal Heart	heart
6	chr10:92720600-92728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:92721200-92723000	Strong transcription	Fetal Thymus	thymus
8	chr10:92721200-92724600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
10	chr10:92721600-92723000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:92721600-92724000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:92721600-92724800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:92721600-92728200	Weak transcription	A549	lung
14	chr10:92721800-92724000	Weak transcription	HSMM	muscle
15	chr10:92721800-92724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:92721800-92724400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:92721800-92724600	Weak transcription	NHLF	lung
18	chr10:92722200-92723200	Weak transcription	HSMMtube	muscle
19	chr10:92722200-92723400	Weak transcription	Right Ventricle	heart
20	chr10:92722200-92724000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:92722200-92724200	Weak transcription	Psoas Muscle	Psoas
22	chr10:92722200-92724200	Weak transcription	NHDF-Ad	bronchial
23	chr10:92722200-92724600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:92722400-92722800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:92722400-92722800	Weak transcription	Osteobl	bone
26	chr10:92722600-92730600	Genic enhancers	Dnd41	blood

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