Variant report

Variant	rs12779698
Chromosome Location	chr10:92711293-92711294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10748556	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10785977	0.83[AFR][1000 genomes]
rs10785978	0.83[AFR][1000 genomes]
rs10881861	0.83[AFR][1000 genomes]
rs10881862	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10881869	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10881872	0.80[AMR][1000 genomes]
rs10881873	0.80[AMR][1000 genomes]
rs11186374	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11186375	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11186376	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11186377	0.83[ASN][1000 genomes]
rs11186388	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11186394	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11186397	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12761951	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12774602	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12776792	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12781271	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1334583	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1418814	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1439092	0.80[AMR][1000 genomes]
rs1439093	0.80[AMR][1000 genomes]
rs1919132	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2178206	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2420498	0.83[AFR][1000 genomes]
rs4335456	0.81[AMR][1000 genomes]
rs4933201	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4933625	0.85[AMR][1000 genomes]
rs4933627	0.83[AFR][1000 genomes]
rs4933628	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4933631	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4933633	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4933634	0.83[AMR][1000 genomes]
rs7079028	0.85[AFR][1000 genomes]
rs7079147	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7083742	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7088989	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7088999	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7094853	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7099299	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs747335	0.82[AMR][1000 genomes]
rs7906208	0.83[AFR][1000 genomes]
rs7909948	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7916703	0.80[ASN][1000 genomes]
rs9732462	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92707600-92719400	Weak transcription	HMEC	breast
2	chr10:92707800-92719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:92708000-92714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:92709000-92714200	Weak transcription	Fetal Thymus	thymus
5	chr10:92709200-92711400	Weak transcription	Dnd41	blood

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