Variant report

Variant	rs7099299
Chromosome Location	chr10:92719584-92719585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1001846	0.82[AFR][1000 genomes]
rs1072491	0.84[AFR][1000 genomes]
rs10748556	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785979	0.82[AFR][1000 genomes]
rs10785980	0.84[AFR][1000 genomes]
rs10785981	0.84[AFR][1000 genomes]
rs10785983	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10881862	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10881865	0.82[AFR][1000 genomes]
rs10881866	0.82[AFR][1000 genomes]
rs10881867	0.82[AFR][1000 genomes]
rs10881869	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881870	0.82[AFR][1000 genomes]
rs10881871	0.84[AFR][1000 genomes]
rs10881872	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881873	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186372	0.87[AFR][1000 genomes]
rs11186374	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186375	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186376	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186377	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186383	0.82[AFR][1000 genomes]
rs11186384	0.82[AFR][1000 genomes]
rs11186385	0.81[AFR][1000 genomes]
rs11186388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186390	0.82[AFR][1000 genomes]
rs11186394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186397	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186398	0.84[AFR][1000 genomes]
rs11186399	0.84[AFR][1000 genomes]
rs11186407	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122870	0.82[AFR][1000 genomes]
rs11528048	0.82[AFR][1000 genomes]
rs11594833	0.82[AFR][1000 genomes]
rs11596841	0.82[AFR][1000 genomes]
rs12217709	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12219023	0.82[AFR][1000 genomes]
rs12570633	0.84[AFR][1000 genomes]
rs12761951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12774602	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776792	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12778021	0.82[AFR][1000 genomes]
rs12779258	0.82[AFR][1000 genomes]
rs12779698	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12780522	0.84[AFR][1000 genomes]
rs12781271	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318550	0.83[JPT][hapmap]
rs1334580	0.84[AFR][1000 genomes]
rs1334581	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1334582	0.84[AFR][1000 genomes]
rs1334583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418814	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1439092	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1439093	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1439094	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1439095	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1544217	0.84[AFR][1000 genomes]
rs1561446	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1919132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141375	0.82[AFR][1000 genomes]
rs2178206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28849130	0.82[AFR][1000 genomes]
rs3885868	0.84[AFR][1000 genomes]
rs4335456	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4411211	0.82[AFR][1000 genomes]
rs4423105	0.83[AFR][1000 genomes]
rs4553280	0.82[AFR][1000 genomes]
rs4639846	0.82[AFR][1000 genomes]
rs4933201	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4933625	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933629	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4933630	0.84[AFR][1000 genomes]
rs4933631	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933633	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933634	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583740	0.84[AFR][1000 genomes]
rs6583741	0.83[AFR][1000 genomes]
rs7067705	0.84[AFR][1000 genomes]
rs7071167	0.84[AFR][1000 genomes]
rs7071323	0.84[AFR][1000 genomes]
rs7075411	0.82[AFR][1000 genomes]
rs7079147	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7080368	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7081190	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7083495	0.84[AFR][1000 genomes]
rs7083742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088989	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088999	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7093432	0.82[AFR][1000 genomes]
rs7094853	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095281	0.82[AFR][1000 genomes]
rs7099297	0.84[AFR][1000 genomes]
rs7099420	0.84[AFR][1000 genomes]
rs7099671	0.84[AFR][1000 genomes]
rs747335	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7895456	0.84[AFR][1000 genomes]
rs7897141	0.80[AFR][1000 genomes]
rs7897403	0.82[AFR][1000 genomes]
rs7897603	0.82[AFR][1000 genomes]
rs7897624	0.82[AFR][1000 genomes]
rs7909948	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916703	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9325454	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs9732462	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92717000-92719800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr10:92717600-92720000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:92717600-92721200	Weak transcription	Fetal Thymus	thymus
5	chr10:92718600-92722200	Enhancers	NHDF-Ad	bronchial
6	chr10:92718800-92722400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr10:92719000-92720000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:92719000-92721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:92719000-92722200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:92719000-92723200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:92719200-92719600	Enhancers	Left Ventricle	heart
12	chr10:92719200-92720200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:92719200-92720600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:92719200-92720600	Genic enhancers	Dnd41	blood
15	chr10:92719200-92721200	Enhancers	Hela-S3	cervix
16	chr10:92719200-92721600	Enhancers	HSMMtube	muscle
17	chr10:92719200-92721800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:92719200-92722200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:92719200-92722200	Enhancers	Psoas Muscle	Psoas
20	chr10:92719200-92722400	Enhancers	Osteobl	bone
21	chr10:92719400-92720200	Flanking Active TSS	HSMM	muscle
22	chr10:92719400-92720400	Enhancers	Right Atrium	heart
23	chr10:92719400-92721200	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links