Variant report

Variant	rs1418814
Chromosome Location	chr10:92725074-92725075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92717534..92719084-chr10:92723226..92725595,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10748556	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10785983	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881858	0.87[AFR][1000 genomes]
rs10881859	0.87[AFR][1000 genomes]
rs10881860	0.90[AFR][1000 genomes]
rs10881862	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10881869	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881872	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881873	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186373	0.90[AFR][1000 genomes]
rs11186374	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186376	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186377	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186388	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186394	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186397	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186407	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12217709	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12761951	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12774602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12776792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12779698	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12781271	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1334581	0.85[AMR][1000 genomes]
rs1334583	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1439092	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439093	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439094	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1439095	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561446	0.91[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1919132	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2178206	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335456	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4933201	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4933625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933628	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933634	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079028	0.81[AFR][1000 genomes]
rs7079147	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080368	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7081190	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083742	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088989	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7088999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099299	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs747335	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916703	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917623	0.87[AFR][1000 genomes]
rs9325454	0.82[CEU][hapmap]
rs9732462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92720600-92725200	Weak transcription	Fetal Heart	heart
3	chr10:92720600-92728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
5	chr10:92721600-92728200	Weak transcription	A549	lung
6	chr10:92722600-92730600	Genic enhancers	Dnd41	blood
7	chr10:92723400-92725800	Enhancers	Right Ventricle	heart
8	chr10:92723400-92727800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:92723800-92725800	Enhancers	HSMMtube	muscle
10	chr10:92724000-92725200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:92724000-92725800	Enhancers	Left Ventricle	heart
12	chr10:92724000-92725800	Enhancers	HSMM	muscle
13	chr10:92724000-92726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:92724000-92726800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:92724200-92726200	Enhancers	NHDF-Ad	bronchial
16	chr10:92724200-92726200	Enhancers	Osteobl	bone
17	chr10:92724200-92727200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:92724400-92725200	Enhancers	Adipose Nuclei	Adipose
19	chr10:92724400-92725800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:92724400-92725800	Enhancers	Fetal Muscle Leg	muscle
21	chr10:92724400-92725800	Enhancers	Spleen	Spleen
22	chr10:92724400-92726000	Enhancers	Fetal Lung	lung
23	chr10:92724400-92726400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:92724600-92725400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:92724600-92725400	Enhancers	NHLF	lung
26	chr10:92724600-92725600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:92724600-92725800	Enhancers	Fetal Thymus	thymus
28	chr10:92724600-92727600	Weak transcription	Fetal Kidney	kidney
29	chr10:92724600-92728800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:92724800-92725200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:92724800-92725400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:92724800-92725600	Weak transcription	Lung	lung
33	chr10:92724800-92727200	Weak transcription	Psoas Muscle	Psoas
34	chr10:92725000-92725400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr10:92725000-92725600	Weak transcription	Right Atrium	heart
36	chr10:92725000-92726200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:92725000-92728800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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