Variant report

Variant	rs10881862
Chromosome Location	chr10:92705409-92705410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92696774..92699626-chr10:92704763..92707739,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10748556	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10785977	0.85[AFR][1000 genomes]
rs10785978	0.86[AFR][1000 genomes]
rs10785983	0.87[AMR][1000 genomes]
rs10881858	0.97[AFR][1000 genomes]
rs10881859	0.97[AFR][1000 genomes]
rs10881860	0.94[AFR][1000 genomes]
rs10881861	0.86[AFR][1000 genomes]
rs10881869	0.87[AMR][1000 genomes]
rs10881872	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10881873	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11186373	0.94[AFR][1000 genomes]
rs11186374	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186375	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11186376	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11186377	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11186388	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11186394	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11186397	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11186407	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12217709	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12573344	0.82[AFR][1000 genomes]
rs12761951	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12774602	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12776792	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12779698	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12781271	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1318550	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs1334581	0.81[AMR][1000 genomes]
rs1334583	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1418814	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1439092	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1439093	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1439094	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1439095	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1561446	0.86[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1919132	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2178206	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2420498	0.86[AFR][1000 genomes]
rs4335456	0.83[AMR][1000 genomes]
rs4933201	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933625	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4933628	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4933631	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4933633	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4933634	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7079028	0.82[AFR][1000 genomes]
rs7079147	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7080368	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7081190	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7083742	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7088989	0.93[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7088999	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7094853	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7099299	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs747335	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7906208	0.86[AFR][1000 genomes]
rs7909948	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7916703	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7917623	0.97[AFR][1000 genomes]
rs9325454	0.81[CEU][hapmap];0.84[JPT][hapmap]
rs9732462	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92700000-92707000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:92704200-92707000	Enhancers	Fetal Thymus	thymus
3	chr10:92704200-92707800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:92704400-92707600	Enhancers	HSMM	muscle
5	chr10:92704600-92705600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:92704600-92705600	Enhancers	Thymus	Thymus
7	chr10:92704600-92707600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:92704600-92708000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:92705000-92705600	Enhancers	Osteobl	bone
10	chr10:92705000-92707600	Enhancers	NHDF-Ad	bronchial
11	chr10:92705200-92705600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:92705200-92705600	Enhancers	HSMMtube	muscle
13	chr10:92705200-92706000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:92705200-92706400	Flanking Active TSS	Dnd41	blood
15	chr10:92705400-92705800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:92705400-92705800	Enhancers	Aorta	Aorta
17	chr10:92705400-92706000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:92705400-92706000	Enhancers	Brain Substantia Nigra	brain

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