Variant report

Variant	rs4933633
Chromosome Location	chr10:92729054-92729055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10748556	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10785983	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881858	0.87[AFR][1000 genomes]
rs10881859	0.87[AFR][1000 genomes]
rs10881860	0.90[AFR][1000 genomes]
rs10881862	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10881869	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10881872	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881873	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186373	0.90[AFR][1000 genomes]
rs11186374	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11186375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186376	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186377	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186388	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186394	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11186397	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186407	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12217709	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12761951	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12774602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12779698	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12781271	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1318550	0.84[JPT][hapmap]
rs1334581	0.85[AMR][1000 genomes]
rs1334583	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1439092	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439093	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439094	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1439095	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561446	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1919132	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178206	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335456	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4933201	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4933625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933628	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933634	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079028	0.81[AFR][1000 genomes]
rs7079147	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7080368	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7081190	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7083742	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7088989	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099299	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs747335	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7909948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916703	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7917623	0.87[AFR][1000 genomes]
rs9325454	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs9732462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
3	chr10:92722600-92730600	Genic enhancers	Dnd41	blood
4	chr10:92725800-92729400	Active TSS	Left Ventricle	heart
5	chr10:92725800-92731800	Active TSS	Right Atrium	heart
6	chr10:92727200-92730200	Active TSS	Right Ventricle	heart
7	chr10:92727200-92730400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:92727400-92730200	Enhancers	Fetal Heart	heart
9	chr10:92727400-92730400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:92727400-92730600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:92727600-92729200	Enhancers	Fetal Kidney	kidney
12	chr10:92727800-92729200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:92727800-92729200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:92727800-92730000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:92727800-92730200	Enhancers	Hela-S3	cervix
16	chr10:92727800-92730400	Enhancers	HSMMtube	muscle
17	chr10:92727800-92730400	Enhancers	Osteobl	bone
18	chr10:92728000-92730000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:92728000-92730200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:92728000-92730200	Enhancers	HMEC	breast
21	chr10:92728200-92729200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:92728200-92729200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:92728200-92729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:92728200-92730200	Enhancers	HUVEC	blood vessel
25	chr10:92728200-92730200	Enhancers	NH-A	brain
26	chr10:92728200-92730400	Enhancers	A549	lung
27	chr10:92728400-92729200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr10:92728400-92729400	Weak transcription	HepG2	liver
29	chr10:92728400-92729600	Enhancers	NHEK	skin
30	chr10:92728400-92730200	Enhancers	NHLF	lung
31	chr10:92728400-92730400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:92728600-92729600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:92728600-92730200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr10:92728800-92729200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:92728800-92729200	Enhancers	Fetal Thymus	thymus
36	chr10:92728800-92729400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:92728800-92729600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:92728800-92730400	Enhancers	NHDF-Ad	bronchial
39	chr10:92729000-92729200	Enhancers	Psoas Muscle	Psoas
40	chr10:92729000-92729200	Flanking Active TSS	HSMM	muscle
41	chr10:92729000-92729400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:92729000-92730000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:92729000-92730400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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