Variant report

Variant	rs12774602
Chromosome Location	chr10:92728024-92728025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10748556	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10785983	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10881858	0.87[AFR][1000 genomes]
rs10881859	0.87[AFR][1000 genomes]
rs10881860	0.90[AFR][1000 genomes]
rs10881862	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10881869	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881872	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881873	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186373	0.90[AFR][1000 genomes]
rs11186374	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186375	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186376	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186377	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186388	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186394	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186397	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186407	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12217709	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12761951	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12776792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12779698	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12781271	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1318550	0.84[JPT][hapmap]
rs1334581	0.85[AMR][1000 genomes]
rs1334583	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439092	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439093	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1439094	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1439095	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561446	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1919132	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2178206	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335456	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4933201	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4933625	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4933628	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933634	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079028	0.81[AFR][1000 genomes]
rs7079147	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080368	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7081190	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083742	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088989	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7088999	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7094853	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7099299	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs747335	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7909948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7916703	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917623	0.87[AFR][1000 genomes]
rs9325454	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs9732462	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92720600-92728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
4	chr10:92721600-92728200	Weak transcription	A549	lung
5	chr10:92722600-92730600	Genic enhancers	Dnd41	blood
6	chr10:92724600-92728800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:92725000-92728800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:92725600-92728800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:92725800-92729000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:92725800-92729400	Active TSS	Left Ventricle	heart
11	chr10:92725800-92731800	Active TSS	Right Atrium	heart
12	chr10:92726000-92728400	Weak transcription	NHLF	lung
13	chr10:92727000-92728600	Enhancers	Fetal Thymus	thymus
14	chr10:92727200-92728400	Enhancers	HepG2	liver
15	chr10:92727200-92728600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:92727200-92728600	Enhancers	Psoas Muscle	Psoas
17	chr10:92727200-92730200	Active TSS	Right Ventricle	heart
18	chr10:92727200-92730400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:92727400-92729000	Enhancers	HSMM	muscle
20	chr10:92727400-92730200	Enhancers	Fetal Heart	heart
21	chr10:92727400-92730400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:92727400-92730600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:92727600-92728400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:92727600-92728600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:92727600-92729200	Enhancers	Fetal Kidney	kidney
26	chr10:92727800-92728400	Enhancers	NHDF-Ad	bronchial
27	chr10:92727800-92728800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:92727800-92728800	Enhancers	Colon Smooth Muscle	Colon
29	chr10:92727800-92729200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:92727800-92729200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:92727800-92730000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:92727800-92730200	Enhancers	Hela-S3	cervix
33	chr10:92727800-92730400	Enhancers	HSMMtube	muscle
34	chr10:92727800-92730400	Enhancers	Osteobl	bone
35	chr10:92728000-92728600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:92728000-92728600	Enhancers	Brain Germinal Matrix	brain
37	chr10:92728000-92728800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:92728000-92730000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr10:92728000-92730200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:92728000-92730200	Enhancers	HMEC	breast

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