Variant report

Variant	rs10882380
Chromosome Location	chr10:95768613-95768614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95767452..95769143-chr10:95770198..95772913,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10882378	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882379	1.00[ASW][hapmap];0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187760	0.82[ASN][1000 genomes]
rs11187765	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187767	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11594479	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599672	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35038192	0.85[EUR][1000 genomes]
rs3814689	0.95[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61866026	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61886277	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583922	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7073291	0.82[CEU][hapmap];0.87[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10882380	PLCE1	cis	parietal	SCAN
rs10882380	ALDH18A1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95761800-95771600	Weak transcription	Right Atrium	heart
2	chr10:95764400-95768800	Enhancers	Duodenum Mucosa	Duodenum
3	chr10:95764800-95769000	Enhancers	Stomach Mucosa	stomach
4	chr10:95766800-95776600	Weak transcription	Small Intestine	intestine
5	chr10:95767000-95768800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:95767000-95776800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:95767400-95776800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:95767600-95777400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:95767800-95774400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:95767800-95775200	Weak transcription	Psoas Muscle	Psoas
11	chr10:95767800-95776800	Weak transcription	HSMMtube	muscle
12	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
13	chr10:95768000-95770800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:95768000-95771200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:95768200-95769600	Weak transcription	Colonic Mucosa	Colon
16	chr10:95768200-95770800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:95768400-95768800	Enhancers	Gastric	stomach
18	chr10:95768400-95768800	Weak transcription	HSMM	muscle
19	chr10:95768400-95769200	Strong transcription	A549	lung
20	chr10:95768400-95770200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr10:95768400-95770200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:95768400-95770200	Strong transcription	Rectal Smooth Muscle	rectum
23	chr10:95768400-95770600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr10:95768400-95771000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:95768400-95783000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:95768600-95769400	Strong transcription	Fetal Muscle Leg	muscle
27	chr10:95768600-95769600	Strong transcription	Fetal Intestine Large	intestine
28	chr10:95768600-95770200	ZNF genes & repeats	Fetal Stomach	stomach
29	chr10:95768600-95770400	ZNF genes & repeats	Fetal Intestine Small	intestine

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